Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0854
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    28   0.89 
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.2  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    27   2.7  
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    26   3.6  
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    26   4.8  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    25   6.3  
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun...    25   6.3  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.3  

>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 117 VNCSNMEQKFPSPLFVFGEKVRTRAI 194
           +  S ME KFP P F+ G K + RAI
Sbjct: 647 LGASEMEFKFPEPGFLEGVKTKQRAI 672


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -2

Query: 525 GTFRDSXDGHVDGLRFYVCSHRASVTQSSRRHSTTFRSAGENCS 394
           G  R S  G +D    YVC    SV  ++   + T R AGE+CS
Sbjct: 305 GHGRCSKYGQLDSC--YVCQCSNSVVSNAAGQNKTIRWAGESCS 346


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 482  RRPSTCPSXESRKVPKNRFPWXK 550
            R+   CPS   R+V K  FPW +
Sbjct: 1168 RQFPNCPSEVIRRVEKKEFPWQR 1190


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 477 YVCSHRASVTQSSRRHSTTFRSAGE 403
           Y+C HRA++ Q        FRS G+
Sbjct: 430 YICYHRATIVQQIPTERIPFRSWGQ 454


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 3/124 (2%)
 Frame = +2

Query: 47  LSTPREEEGIND--GRETG-IDTQDLSELQQHGAEVPLASVRFRREGAHPGHQLQADHHG 217
           +S+P+E +G+ND   R+T  ++T+++    ++ A VP      R+ G  PG + +     
Sbjct: 296 VSSPKESDGLNDSWSRQTNQVETENV----ENEAGVP------RKRGRPPGARNKIKRL- 344

Query: 218 RSHTSAALRL*QMEWVDNVVRLDNWLNFQMSPRSAALIIALRPAIERIVERAAAQPDAAL 397
           RS  S +L L  + W +   +L +  N  +  RSA   +A  P +E + +  +   +   
Sbjct: 345 RSEPSVSLTL-SISWYERFEKLMHAQNTML--RSAFSHVARLP-METVSQLLSHYTETIS 400

Query: 398 QFSP 409
           Q+ P
Sbjct: 401 QYLP 404


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 112 VLCINAGFPSVVNTFLFPWCRQTLG 38
           + C+  GFP+ V+   F W  Q LG
Sbjct: 57  ISCLVYGFPNKVSALKFEWNWQNLG 81


>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
           Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 251

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 454 GRPV-TTNIKTKTVNMPIXRIPKGSKKPIPMEXGIGGKP 567
           G+PV TTN   K  N+ + R+P G       +  +G KP
Sbjct: 60  GKPVLTTNDLKKESNVFLVRLPPGMSADQISQLKVGSKP 98


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 193 MARVRTFSPKTNRGEG 146
           M+  RT SP TNRG+G
Sbjct: 1   MSNPRTKSPNTNRGQG 16


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,339,360
Number of Sequences: 5004
Number of extensions: 43536
Number of successful extensions: 123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)