Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0854
(595 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0343 - 16960764-16960895,16961166-16961171,16961272-169616... 61 7e-10
04_03_0985 - 21438036-21438116,21438373-21438495,21438903-214389... 36 0.018
03_05_1133 - 30614901-30615389,30615823-30615933,30616113-306161... 34 0.074
07_03_0459 - 18422034-18422351 30 1.2
11_01_0763 + 6402901-6403971,6404581-6404826 30 1.6
03_02_0625 + 9942767-9943196,9943985-9944176,9944267-9944506,994... 30 1.6
03_01_0024 - 214141-215097 29 2.1
08_02_1077 - 24160545-24161936 29 3.7
08_01_0648 + 5602454-5602513,5602913-5603000,5603128-5604248,560... 29 3.7
06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078... 28 4.9
05_07_0066 + 27453611-27453627,27454729-27454872,27455998-274566... 28 4.9
10_02_0180 + 6292190-6292654,6293923-6294915 28 6.5
06_03_1409 - 29966787-29966990,29967150-29967413,29968098-299682... 28 6.5
04_04_1366 + 32970640-32970981,32971678-32971765,32971919-329720... 28 6.5
03_02_0826 + 11569961-11570301,11572220-11572454 27 8.5
>10_08_0343 - 16960764-16960895,16961166-16961171,16961272-16961640,
16962118-16962304,16962567-16962759,16962864-16963137,
16963215-16963374,16963985-16964199,16964784-16964876,
16965192-16965260,16965293-16965445,16965534-16965737,
16966416-16966691,16967336-16967431,16967585-16967788,
16967877-16968069,16968229-16968374,16968771-16969425,
16971462-16971774,16971989-16972139,16972602-16973815,
16973933-16974182,16974784-16975035
Length = 1934
Score = 60.9 bits (141), Expect = 7e-10
Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Frame = +3
Query: 3 DLVIALMCMGLYPNV--CLHQGKRKVLTTEGKPAL-IHKTSVNCSNMEQKFPSPLFVFGE 173
++V A++C GLYPNV C +GKR T+ + IH +SVN +FP P V+ E
Sbjct: 1776 EMVCAVLCAGLYPNVVQCKRRGKRTAFYTKDVGKVDIHPSSVNAGI--HQFPLPYLVYSE 1833
Query: 174 KVRTRAISCKQTTMVAPIHLLLFG 245
KV+T +I + +T ++ LLLFG
Sbjct: 1834 KVKTASIYVRDSTNISDYALLLFG 1857
>04_03_0985 - 21438036-21438116,21438373-21438495,21438903-21438995,
21439176-21439388,21439589-21439687,21440248-21440317,
21442549-21442619,21442817-21442954,21443034-21443132,
21444061-21444144,21444268-21444324,21444594-21444683,
21444886-21445026,21445778-21445882,21445962-21446114,
21446215-21446316,21446404-21446562,21447039-21447222,
21447336-21447418,21447523-21447588,21447736-21447793,
21447903-21448003,21448269-21448355,21449063-21449185,
21449285-21449364,21449857-21450066,21450159-21450270,
21450709-21450927,21451356-21451726,21451866-21451965,
21452544-21452752,21453232-21453337,21453435-21453767
Length = 1439
Score = 36.3 bits (80), Expect = 0.018
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +3
Query: 102 IHKTSVNCSNMEQKFPSPLFVFGEKVRTRAISCKQTTMVAPIHLLLFG 245
IH +S+N S ++P VF EKV T + + T++++P LLLFG
Sbjct: 1319 IHPSSMNHSLKAGQYP--FLVFLEKVETSKVFLRDTSVISPYSLLLFG 1364
>03_05_1133 - 30614901-30615389,30615823-30615933,30616113-30616178,
30616347-30616406,30616493-30616801,30616960-30617108,
30617200-30617269,30617370-30617494,30617516-30617573,
30618176-30618370,30618585-30618857,30618950-30619120,
30619203-30619333,30619423-30619582,30619712-30619900,
30620023-30620118,30620381-30620611,30620715-30620853,
30620903-30621057,30621160-30621378
Length = 1131
Score = 34.3 bits (75), Expect = 0.074
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +3
Query: 6 LVIALMCMGLYPNVC--LH-QGKRKVLTTEGKPALIHKTSVNCSNMEQKFPSPLFVFGEK 176
LV ++C GL+P + +H + T + L++ SVN Q P P VFGEK
Sbjct: 873 LVRGIICSGLFPGITSVVHRENSMSFKTMDDGQVLLYANSVNAKY--QTIPYPWLVFGEK 930
Query: 177 VR 182
V+
Sbjct: 931 VK 932
>07_03_0459 - 18422034-18422351
Length = 105
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +1
Query: 136 SRSSPRLCSFSARRCAPGPSAASRPPW-SLPYICCSSAVTNGMGGQRGAAGQLAELPDVA 312
SRS P + RR PSA PP S P + +++ G G R G A
Sbjct: 31 SRSHPHVARRIRRRNQGHPSAPQAPPLSSTPTVRAAASGVGGAGDSRERKGSSGG----A 86
Query: 313 AIGRPHHSA 339
+GRPH A
Sbjct: 87 LLGRPHGPA 95
>11_01_0763 + 6402901-6403971,6404581-6404826
Length = 438
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = -2
Query: 252 CYSRRAADVWERPWWSACS*WPGCAPSRRKRTEARGTSAP 133
C A W RPWW W RR+R EARG P
Sbjct: 100 CARAATAAAW-RPWWQRAERW------RRRRREARGRLRP 132
>03_02_0625 +
9942767-9943196,9943985-9944176,9944267-9944506,
9945397-9945614,9946284-9946535,9947132-9947410
Length = 536
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +2
Query: 86 RETGIDTQDLSELQQHGAEVPLASVR-FRREGAHPGHQLQADHHGRSHTSAALRL*QMEW 262
R GI S L++ GA + + F HPG L + H H + ALR+ W
Sbjct: 205 RLAGIPGIKPSLLEEFGARLVTYDLPGFGESDPHPGRDLNSSAHDMLHLAGALRIVDKFW 264
Query: 263 V 265
V
Sbjct: 265 V 265
>03_01_0024 - 214141-215097
Length = 318
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 14 SPHVHGPVP*RLSTPREEEGINDGRETGIDTQDLSELQQ-HGAEVPLASVRFRRE 175
+PH HG L + E ++ GR G+ + LQQ HG L VR R+
Sbjct: 55 APHPHGGAHALLDLWLDPEPLDLGRHVGVRAHGVQRLQQGHGGAQCLQQVRRERQ 109
>08_02_1077 - 24160545-24161936
Length = 463
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +2
Query: 320 AALIIALRPAIERIVERAAAQPDAA 394
A L++ LR A R+ E AAA PDAA
Sbjct: 379 ARLVVDLRGAAVRVAEGAAAVPDAA 403
>08_01_0648 +
5602454-5602513,5602913-5603000,5603128-5604248,
5605146-5605217,5605218-5605373,5605458-5605748
Length = 595
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 169 ARRCAPGPSAASRPPWSLPYICCSSAVTNGMGGQRGAAGQ 288
A++ +P P S P I CS + +GM Q+GAAGQ
Sbjct: 26 AKKASPQSLREFSSPTSSPSIACSGNLFDGM--QQGAAGQ 63
>06_02_0187 +
12805788-12807007,12807059-12807186,12807811-12807859,
12808508-12808853
Length = 580
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 127 ATWSRSSPRLCSFSARRCAPGP--SAASRPPWSLPYICCSSAVTNGMGGQR 273
A +S +S R F A APG A RPP++ Y+ C S++ + R
Sbjct: 226 AYYSTASRRYERFVALEEAPGSYDDARFRPPFAYDYLYCGSSLYGNLSSAR 276
>05_07_0066 +
27453611-27453627,27454729-27454872,27455998-27456690,
27457700-27458111,27458220-27458297,27458938-27458953,
27459038-27459192
Length = 504
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 161 RFRREGAHPGHQLQADHHGRSHTSAA 238
+++ H GH ADHHG S +S A
Sbjct: 347 KYQHHTGHGGHGQAADHHGPSSSSKA 372
>10_02_0180 + 6292190-6292654,6293923-6294915
Length = 485
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +2
Query: 317 SAALIIALRPAIERIVERAAAQPDAALQFSPAERKVVE 430
+AA A PA++ RAAA DA L +P +R VVE
Sbjct: 227 AAASASASSPALQNGARRAAAAADAMLS-TPPDRMVVE 263
>06_03_1409 -
29966787-29966990,29967150-29967413,29968098-29968241,
29969000-29969329
Length = 313
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 241 KSSRCMGATMVVCLQLMARVRTFSPKTNRGEG 146
+SSRC+GA+ CL A +P G G
Sbjct: 26 RSSRCVGASHARCLAADANAEAVAPSRRGGHG 57
>04_04_1366 +
32970640-32970981,32971678-32971765,32971919-32972014,
32972583-32972593
Length = 178
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 256 GMGGQRGAAGQLAEL-PDVAAIGRPHHSAAARHRE 357
G GG GAAG+LA L D+ A R AAA E
Sbjct: 74 GGGGAGGAAGELARLAADLGAAERADAEAAAEEAE 108
>03_02_0826 + 11569961-11570301,11572220-11572454
Length = 191
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 305 MSPRSAALIIALRPAIERIVERAAAQPDAALQFSPAERKVVE 430
+SP +A I+AL A +V PDAA P +RK E
Sbjct: 16 LSPAAAVTILALMLATYLLVSSLFVAPDAAPPKPPPQRKEEE 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,643,164
Number of Sequences: 37544
Number of extensions: 389780
Number of successful extensions: 1504
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1503
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -