Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0854
(595 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52045| Best HMM Match : DUF1605 (HMM E-Value=3.8e-14) 134 4e-32
SB_55323| Best HMM Match : DUF1605 (HMM E-Value=0.014) 33 0.23
SB_42097| Best HMM Match : DUF1605 (HMM E-Value=3e-15) 31 0.53
SB_56799| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_46813| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_46519| Best HMM Match : DUF720 (HMM E-Value=0.49) 29 2.1
SB_14913| Best HMM Match : DUF720 (HMM E-Value=0.47) 29 2.1
SB_5214| Best HMM Match : SAP (HMM E-Value=0.8) 29 2.1
SB_3966| Best HMM Match : DUF720 (HMM E-Value=0.24) 29 2.1
SB_58420| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_19755| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_13086| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_36541| Best HMM Match : WD40 (HMM E-Value=0) 29 2.8
SB_8660| Best HMM Match : Carboxyl_trans (HMM E-Value=0) 29 2.8
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_36962| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_529| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_47476| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_35761| Best HMM Match : DUF720 (HMM E-Value=0.47) 28 6.5
SB_34445| Best HMM Match : DUF720 (HMM E-Value=0.47) 28 6.5
SB_29869| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_12967| Best HMM Match : DUF720 (HMM E-Value=0.47) 27 8.6
SB_11313| Best HMM Match : RVT_1 (HMM E-Value=2.1e-18) 27 8.6
>SB_52045| Best HMM Match : DUF1605 (HMM E-Value=3.8e-14)
Length = 812
Score = 134 bits (325), Expect = 4e-32
Identities = 57/82 (69%), Positives = 71/82 (86%)
Frame = +3
Query: 9 VIALMCMGLYPNVCLHQGKRKVLTTEGKPALIHKTSVNCSNMEQKFPSPLFVFGEKVRTR 188
V+AL+C+GLYPNVC+H+ KRKV+TTEGK AL+HK+SVNC+N E FPSP FVFGEK+RTR
Sbjct: 496 VVALLCLGLYPNVCMHREKRKVITTEGKAALVHKSSVNCTNREYIFPSPFFVFGEKIRTR 555
Query: 189 AISCKQTTMVAPIHLLLFGCNK 254
A+SCKQ TMV P+ LLLF ++
Sbjct: 556 AVSCKQMTMVNPLQLLLFSSSR 577
Score = 44.0 bits (99), Expect = 9e-05
Identities = 17/64 (26%), Positives = 39/64 (60%)
Frame = +2
Query: 269 NVVRLDNWLNFQMSPRSAALIIALRPAIERIVERAAAQPDAALQFSPAERKVVECLRELC 448
+V+ +DNW+ +M A+++A+R AI+ ++ RAA+ P + + P + +++ ++ L
Sbjct: 583 DVICMDNWVQLRMPHAQGAMVVAMRQAIDMLLIRAASNPVSIAEPLPEDEQIINTVKSLS 642
Query: 449 VTDA 460
+A
Sbjct: 643 RNNA 646
>SB_55323| Best HMM Match : DUF1605 (HMM E-Value=0.014)
Length = 125
Score = 32.7 bits (71), Expect = 0.23
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +3
Query: 102 IHKTSVNCSNMEQKFPSPLFVFGEKVRTRAISCKQTTMVAPIHLLLF 242
IH SVN + SP V+ EKV+T + + T+MV+ LLLF
Sbjct: 3 IHPKSVNFQ--VNFYESPYLVYHEKVKTSKVYIRDTSMVSVYALLLF 47
>SB_42097| Best HMM Match : DUF1605 (HMM E-Value=3e-15)
Length = 889
Score = 31.5 bits (68), Expect = 0.53
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Frame = +3
Query: 6 LVIALMCMGLYPNVCL--HQGKRK----VLTTEGKPALIHKTSVNCSNMEQKFPSPLFVF 167
LV A++C GLYPNV H K K + T E +H SVN F + ++
Sbjct: 34 LVKAILCAGLYPNVARIEHHDKLKRPPRLFTQEDGKVALHPKSVNVE--VTAFQNDWLIY 91
Query: 168 GEKVRTRAI 194
+K+++ +
Sbjct: 92 HQKIKSSKV 100
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 275 VRLDNWLNFQMSPRSAALIIALRPAIERIVERAAAQPDAAL 397
+ +DN++ F+ R A L+ LR ++ ++ER +QP L
Sbjct: 151 IAVDNFIKFRSPKRIANLVKDLRRELDTLLERKISQPSLKL 191
>SB_56799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 190 ARVRTFSPKTNRGEGNFCSMLLQFTEVLCINAGFP 86
A R S +T+ + N S+ L EV+C NAGFP
Sbjct: 185 ADTRNASDETSEEDENAVSITLAPDEVVCHNAGFP 219
>SB_46813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 190 ARVRTFSPKTNRGEGNFCSMLLQFTEVLCINAGFP 86
A R S +T+ + N S+ L EV+C NAGFP
Sbjct: 258 ADTRNASDETSEEDENAVSITLAPDEVVCHNAGFP 292
>SB_46519| Best HMM Match : DUF720 (HMM E-Value=0.49)
Length = 1205
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 190 ARVRTFSPKTNRGEGNFCSMLLQFTEVLCINAGFP 86
A R S +T+ + N S+ L EV+C NAGFP
Sbjct: 976 ADTRNASDETSEEDENAVSITLAPDEVVCHNAGFP 1010
>SB_14913| Best HMM Match : DUF720 (HMM E-Value=0.47)
Length = 528
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 190 ARVRTFSPKTNRGEGNFCSMLLQFTEVLCINAGFP 86
A R S +T+ + N S+ L EV+C NAGFP
Sbjct: 299 ADTRNASDETSEEDENAVSITLAPDEVVCHNAGFP 333
>SB_5214| Best HMM Match : SAP (HMM E-Value=0.8)
Length = 660
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 190 ARVRTFSPKTNRGEGNFCSMLLQFTEVLCINAGFP 86
A R S +T+ + N S+ L EV+C NAGFP
Sbjct: 406 ADTRNASDETSEEDENAVSITLAPDEVVCHNAGFP 440
>SB_3966| Best HMM Match : DUF720 (HMM E-Value=0.24)
Length = 250
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 190 ARVRTFSPKTNRGEGNFCSMLLQFTEVLCINAGFP 86
A R S +T+ + N S+ L EV+C NAGFP
Sbjct: 21 ADTRNASDETSEEDENAVSITLAPDEVVCHNAGFP 55
>SB_58420| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 679
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 190 ARVRTFSPKTNRGEGNFCSMLLQFTEVLCINAGFP 86
A R S +T+ + N S+ L EV+C NAGFP
Sbjct: 263 ADTRNASDETSEEDENAVSITLAPDEVVCHNAGFP 297
>SB_19755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 621
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 190 ARVRTFSPKTNRGEGNFCSMLLQFTEVLCINAGFP 86
A R S +T+ + N S+ L EV+C NAGFP
Sbjct: 392 ADTRNASDETSEEDENAVSITLAPDEVVCHNAGFP 426
>SB_13086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 190 ARVRTFSPKTNRGEGNFCSMLLQFTEVLCINAGFP 86
A R S +T+ + N S+ L EV+C NAGFP
Sbjct: 21 ADTRNASDETSEEDENAVSITLAPDEVVCHNAGFP 55
>SB_36541| Best HMM Match : WD40 (HMM E-Value=0)
Length = 1070
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +2
Query: 332 IALRPAIERIVERAAAQPDAALQFSPAERKVVECLRELCVTDAR 463
I +PA V R A P S E K+ +C+ CVT AR
Sbjct: 587 IITKPASVSCVTRVATSPKVVTGSSDGEMKLWDCVTGECVTIAR 630
>SB_8660| Best HMM Match : Carboxyl_trans (HMM E-Value=0)
Length = 1311
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/68 (23%), Positives = 31/68 (45%)
Frame = +2
Query: 224 HTSAALRL*QMEWVDNVVRLDNWLNFQMSPRSAALIIALRPAIERIVERAAAQPDAALQF 403
H + L E + + + WL+F R + +++R ++ R+ +R + P L
Sbjct: 666 HHNGVSHLVVPEDFEGIAAIMRWLSFVPLVRPPFVRLSIRLSVVRLSDRPSLCPSICLSI 725
Query: 404 SPAERKVV 427
SP+ R V
Sbjct: 726 SPSVRPTV 733
>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/54 (37%), Positives = 25/54 (46%)
Frame = +1
Query: 121 TAATWSRSSPRLCSFSARRCAPGPSAASRPPWSLPYICCSSAVTNGMGGQRGAA 282
T+ SRS+PR S S R PS S P S P +S+ + G RG A
Sbjct: 200 TSTPTSRSTPRSRSRSRARTPSTPSTPSTP--STPSTITTSSRASSRGSARGGA 251
>SB_36962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 186 GCAPSRRKRTEARGTSAP 133
GCAPSR+K E+ G S+P
Sbjct: 2 GCAPSRQKEQESGGISSP 19
>SB_529| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 186 GCAPSRRKRTEARGTSAP 133
GCAPSR+K E+ G S+P
Sbjct: 2 GCAPSRQKEQESGGISSP 19
>SB_47476| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 190 ARVRTFSPKTNRGEGNFCSMLLQFTEVLCINAGFP 86
A R S +T+ + N S+ L +V+C NAGFP
Sbjct: 217 ADTRNASDETSEEDENAVSITLAPDKVVCHNAGFP 251
>SB_35761| Best HMM Match : DUF720 (HMM E-Value=0.47)
Length = 414
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 190 ARVRTFSPKTNRGEGNFCSMLLQFTEVLCINAGFP 86
A R S +T+ + N S+ L EV+C N GFP
Sbjct: 185 ADTRNASDETSEEDENAVSITLAPDEVVCHNTGFP 219
>SB_34445| Best HMM Match : DUF720 (HMM E-Value=0.47)
Length = 371
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 190 ARVRTFSPKTNRGEGNFCSMLLQFTEVLCINAGFP 86
A R S +T+ + N S+ L +V+C NAGFP
Sbjct: 142 ADTRNASDETSEEDENAVSITLAPDKVVCHNAGFP 176
>SB_29869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 190 ARVRTFSPKTNRGEGNFCSMLLQFTEVLCINAGFP 86
A R S +T+ + N S+ L +V+C NAGFP
Sbjct: 11 ADTRNASDETSEEDENAVSITLAPDKVVCHNAGFP 45
>SB_12967| Best HMM Match : DUF720 (HMM E-Value=0.47)
Length = 227
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 172 SPKTNRGEGNFCSMLLQFTEVLCINAGFP 86
S +T+ + N S+ L EV+C NAGFP
Sbjct: 4 SDETSEEDENAVSITLAPDEVVCHNAGFP 32
>SB_11313| Best HMM Match : RVT_1 (HMM E-Value=2.1e-18)
Length = 284
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 538 PMEXGIGGKPKPGTLSKS 591
P G GKPKPG L+KS
Sbjct: 3 PQNVGDDGKPKPGVLNKS 20
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,040,515
Number of Sequences: 59808
Number of extensions: 393524
Number of successful extensions: 1170
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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