Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0854
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50071-4|CAA90409.2| 1301|Caenorhabditis elegans Hypothetical pr...    88   4e-18
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z81035-10|CAB02733.2|  405|Caenorhabditis elegans Hypothetical p...    28   5.8  
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.      28   5.8  
AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophi...    28   5.8  

>Z50071-4|CAA90409.2| 1301|Caenorhabditis elegans Hypothetical protein
            T07D4.3 protein.
          Length = 1301

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 48/87 (55%), Positives = 60/87 (68%), Gaps = 3/87 (3%)
 Frame = +3

Query: 3    DLVIALMCMGLYPNVCLHQGKRKVLTTEGKPALIHKTS--VNCSN-MEQKFPSPLFVFGE 173
            +L+ +L+ M LYPNV  + GKRKVLT E   ALI+K S  V  +N  E  FPSPL VF E
Sbjct: 1003 NLMRSLLVMALYPNVAYYVGKRKVLTIEQSSALINKYSMLVPMNNRQEMDFPSPLLVFTE 1062

Query: 174  KVRTRAISCKQTTMVAPIHLLLFGCNK 254
            KVRTR ISCKQ ++++ I LL+FG  K
Sbjct: 1063 KVRTRCISCKQMSVISAIQLLVFGSRK 1089



 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 16/60 (26%), Positives = 38/60 (63%)
 Frame = +2

Query: 266  DNVVRLDNWLNFQMSPRSAALIIALRPAIERIVERAAAQPDAALQFSPAERKVVECLREL 445
            + +VR+D  +  +M+  +AA +I LRP IE ++ ++   P++    +P++ ++ + LR++
Sbjct: 1095 EGLVRIDETITIRMNVSTAAALIGLRPCIEALLVKSCENPESLAGLNPSDAELRQLLRDI 1154


>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = -1

Query: 160 NRGEGNFCSMLL---QFTEVLCINAGFP 86
           N+G+  FCS L    Q  +V C+NAGFP
Sbjct: 321 NQGQTCFCSELFNGKQCEKVNCMNAGFP 348


>Z81035-10|CAB02733.2|  405|Caenorhabditis elegans Hypothetical
           protein C15H11.6 protein.
          Length = 405

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = -2

Query: 591 TFRKGPRFRFPPNSXFHGNRFFGTFRDSXDGHVDGLRFYVCSHRASVTQSSRRHSTTFRS 412
           TFR GP    P N+  H N F  TF  +  G  +G +  + S +  ++  S+R    +R 
Sbjct: 339 TFRDGPSAIKPENTEEHDNYFTRTFMVAPRG--EG-KVAIVSDQLFISSMSKRRGDQYRM 395

Query: 411 AGENCS 394
             E  +
Sbjct: 396 LVETAT 401


>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = -1

Query: 160 NRGEGNFCSMLL---QFTEVLCINAGFP 86
           N+G+  FCS L    Q  +V C+NAGFP
Sbjct: 321 NQGQTCFCSELFNGKQCEKVNCMNAGFP 348


>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = -1

Query: 160 NRGEGNFCSMLL---QFTEVLCINAGFP 86
           N+G+  FCS L    Q  +V C+NAGFP
Sbjct: 321 NQGQTCFCSELFNGKQCEKVNCMNAGFP 348


>Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical protein
            F22B5.7 protein.
          Length = 1415

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 139  CSMLLQFTEVLCINAGFPSVVNTFLFPWCRQTLGYRPMHMRA 14
            C ++L  TE L +N G   +V+     WC + L  R   +RA
Sbjct: 1127 CGLILAMTESLQMNTGITELVSKLSSKWCDE-LEKRRAQLRA 1167


>AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.
          Length = 1415

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 139  CSMLLQFTEVLCINAGFPSVVNTFLFPWCRQTLGYRPMHMRA 14
            C ++L  TE L +N G   +V+     WC + L  R   +RA
Sbjct: 1127 CGLILAMTESLQMNTGITELVSKLSSKWCDE-LEKRRAQLRA 1167


>AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophila
           vasa intronic gene)ortholog protein 1, isoform a
           protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 486 DRQH-AHRSNPERFQKTDSHGXRNWGE 563
           DRQ  + R+    F K D HG  NWG+
Sbjct: 181 DRQSGSDRTGVRSFDKKDGHGKGNWGD 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,634,673
Number of Sequences: 27780
Number of extensions: 281652
Number of successful extensions: 943
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)