Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0854
         (595 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   9.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.1  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/31 (22%), Positives = 16/31 (51%)
 Frame = -2

Query: 477 YVCSHRASVTQSSRRHSTTFRSAGENCSAAS 385
           Y C +++ +    + HS  ++    NC+ A+
Sbjct: 24  YSCVNKSMLNSHLKSHSNVYQYRCANCTYAT 54


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +1

Query: 133 WSRSSPRLCSFSARRCAPG 189
           WS     LC  S+  C PG
Sbjct: 527 WSHVLGWLCGLSSMLCIPG 545


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +1

Query: 133 WSRSSPRLCSFSARRCAPG 189
           WS     LC  S+  C PG
Sbjct: 580 WSHVLGWLCGLSSMLCIPG 598


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +2

Query: 272 VVRLDNWLNFQMSPRSAALIIALRPAIERIVERAAAQPDAALQFSPAERKVVECLREL 445
           +VR     N+   P + A    L P  + +  +     D + +FSPA R VVE  + +
Sbjct: 201 LVRARETPNYTACPPTLAC--PLNPNPQPLTGQQELLQDFSKRFSPAIRGVVEFAKRI 256


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,604
Number of Sequences: 438
Number of extensions: 3309
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)