Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0854
(595 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g35920.1 68415.m04409 helicase domain-containing protein simi... 54 7e-08
At1g48650.1 68414.m05445 helicase domain-containing protein cont... 50 9e-07
At2g01130.1 68415.m00021 helicase domain-containing protein simi... 48 5e-06
At1g58060.1 68414.m06580 helicase domain-containing protein cont... 46 2e-05
At5g04895.1 68418.m00514 helicase domain-containing protein simi... 42 3e-04
At1g58050.1 68414.m06579 helicase domain-containing protein cont... 42 4e-04
At5g67160.1 68418.m08466 transferase family protein similar to a... 29 2.3
At3g53950.1 68416.m05960 glyoxal oxidase-related contains simila... 28 5.4
At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam PF05... 27 7.1
At5g41100.2 68418.m04997 expressed protein 27 9.4
At5g41100.1 68418.m04996 expressed protein 27 9.4
At4g28380.1 68417.m04062 leucine-rich repeat family protein cont... 27 9.4
At2g23530.1 68415.m02808 expressed protein ; expression supporte... 27 9.4
>At2g35920.1 68415.m04409 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 995
Score = 54.0 bits (124), Expect = 7e-08
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Frame = +3
Query: 3 DLVIALMCMGLYPNV--CLHQGKRKVLTTEGKPAL-IHKTSVNCSNMEQKFPSPLFVFGE 173
+++ A++C GLYPNV C +GKR T+ + IH SVN F P V+ E
Sbjct: 841 EMISAVLCAGLYPNVVQCKRRGKRTAFYTKELGKVDIHPGSVNAR--VNLFSLPYLVYSE 898
Query: 174 KVRTRAISCKQTTMVAPIHLLLFGCN 251
KV+T ++ + +T ++ LL+FG N
Sbjct: 899 KVKTTSVYIRDSTNISDYALLMFGGN 924
>At1g48650.1 68414.m05445 helicase domain-containing protein contains
similarity to DEIH-box RNA/DNA helicase [Arabidopsis
thaliana] GI:5881579; contains Pfam profiles PF04408:
Helicase associated domain (HA2), PF00271: Helicase
conserved C-terminal domain, PF00035: Double-stranded RNA
binding motif
Length = 1197
Score = 50.4 bits (115), Expect = 9e-07
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Frame = +3
Query: 6 LVIALMCMGLYPNVCLHQGKRKVLTT---EGKPALIHKTSVNCSNMEQKFPSPLFVFGEK 176
LV A++C G++P VC K K +T E L++ +SVN N+ P P VF +K
Sbjct: 915 LVRAIICAGMFPGVCSVVNKEKSITLKTMEDGQVLLYSSSVN-GNVPM-IPFPWLVFNDK 972
Query: 177 VRTRAISCKQTTMVAPIHLLLFG 245
V+ ++ + +T V+ LLLFG
Sbjct: 973 VKVNSVFLRDSTAVSDSVLLLFG 995
>At2g01130.1 68415.m00021 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 1112
Score = 48.0 bits (109), Expect = 5e-06
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Frame = +3
Query: 3 DLVIALMCMGLYPNVC--LHQGKRKVLTT-EGKPALIHKTSVNCSNMEQKFPSPLFVFGE 173
+L A++C G+YP +C +H + L T E L++ S N E K P P VF E
Sbjct: 833 NLTRAVICYGMYPGICSVVHNERSFSLKTMEDGQVLLYSNSENAR--ETKIPYPWLVFNE 890
Query: 174 KVRTRAISCKQTTMVAPIHLLLFG 245
K++ ++ + +T + L+LFG
Sbjct: 891 KIKVNSVFLRDSTACSDSTLILFG 914
>At1g58060.1 68414.m06580 helicase domain-containing protein contains
similarity to SP|P24785 Dosage compensation regulator
(Male-less protein) (No action potential protein)
{Drosophila melanogaster}; contains Pfam profiles
PF04408: Helicase associated domain (HA2), PF00271:
Helicase conserved C-terminal domain
Length = 1459
Score = 46.0 bits (104), Expect = 2e-05
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 18/99 (18%)
Frame = +3
Query: 3 DLVIALMCMGLYPNVCLH-QGKRKV----LTTEG-------------KPALIHKTSVNCS 128
++V A++C GLYPN+ + +G + LT +G + IH +S+N S
Sbjct: 1288 EVVKAILCAGLYPNIAANDKGITETTFNSLTKQGNQTKSYSAWYDGRREVHIHPSSIN-S 1346
Query: 129 NMEQKFPSPLFVFGEKVRTRAISCKQTTMVAPIHLLLFG 245
N + F +P VF EKV T + + TT+V+P +LLFG
Sbjct: 1347 NFKA-FQNPFLVFLEKVETNKVYLRDTTIVSPFSILLFG 1384
>At5g04895.1 68418.m00514 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579;contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain, PF00035: Double-stranded RNA binding
motif
Length = 581
Score = 41.9 bits (94), Expect = 3e-04
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +3
Query: 6 LVIALMCMGLYPNVC--LH-QGKRKVLTTEGKPALIHKTSVNCSNMEQKFPSPLFVFGEK 176
LV A++C GL+P + +H + T + ++ SVN + P P VFGEK
Sbjct: 298 LVRAVICSGLFPGIASVVHRETSMSFKTMDDGQVSLYANSVN--SRFPTIPYPWLVFGEK 355
Query: 177 VRTRAISCKQTTMVAPIHLLLFG 245
V+ A+ + +T V L+LFG
Sbjct: 356 VKVNAVLIRDSTGVPDSSLILFG 378
>At1g58050.1 68414.m06579 helicase domain-containing protein contains
similarity to SP|P24785 Dosage compensation regulator
(Male-less protein) (No action potential protein)
{Drosophila melanogaster}; contains Pfam profiles
PF04408: Helicase associated domain (HA2), PF00271:
Helicase conserved C-terminal domain
Length = 1417
Score = 41.5 bits (93), Expect = 4e-04
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 12/93 (12%)
Frame = +3
Query: 3 DLVIALMCMGLYPNVC----------LHQGKRKVLTTEGKPAL-IHKTSVNCSNMEQKFP 149
++V A++C GL PN+ + +R + +GK + IH+ S+N N + F
Sbjct: 1252 EVVKAILCAGLCPNIAEGLVNRLTKPAEETQRYAVWHDGKREVHIHRNSIN-KNCKA-FQ 1309
Query: 150 SPLFVFGEKVRTRAISCKQ-TTMVAPIHLLLFG 245
P VF EK+ T+ + Q TT+V+P +LLFG
Sbjct: 1310 YPFIVFLEKLETKKVVYLQDTTVVSPFSILLFG 1342
>At5g67160.1 68418.m08466 transferase family protein similar to
anthranilate N-hydroxycinnamoyl/benzoyltransferase,
Dianthus caryophyllus [gi:2239091]; contains Pfam
transferase family domain PF002458
Length = 434
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 44 RLSTPREEEGINDGRETGIDTQDLSELQQHG 136
RL+ P EEE + +TGI T + EL HG
Sbjct: 290 RLNPPLEEECFGNVSQTGIATVTVGELLDHG 320
>At3g53950.1 68416.m05960 glyoxal oxidase-related contains
similarity to glyoxal oxidase precursor [Phanerochaete
chrysosporium] gi|1050302|gb|AAA87594
Length = 545
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 364 HDPLDGGPQRYDEGGRS 314
+ PLDGGP+ Y GG S
Sbjct: 254 YPPLDGGPRNYPSGGSS 270
>At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam
PF05794: T-complex protein 11
Length = 1131
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 406 RELQRRVGLGRRALHDPLDGGPQRYD 329
+EL+R +G+GR A+ P GP +D
Sbjct: 823 QELKREIGIGRIAIMKPFLQGPAGFD 848
>At5g41100.2 68418.m04997 expressed protein
Length = 582
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = +2
Query: 314 RSAALIIALRPAIERIVERAAAQPDAALQFSPAERKVVECLREL 445
R+A + +R +R++E AAA ++A +FS + ++ CL ++
Sbjct: 36 RAAKDMQDMREGYDRLLEVAAAMANSAYEFSESLGEMGSCLEQI 79
>At5g41100.1 68418.m04996 expressed protein
Length = 586
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = +2
Query: 314 RSAALIIALRPAIERIVERAAAQPDAALQFSPAERKVVECLREL 445
R+A + +R +R++E AAA ++A +FS + ++ CL ++
Sbjct: 36 RAAKDMQDMREGYDRLLEVAAAMANSAYEFSESLGEMGSCLEQI 79
>At4g28380.1 68417.m04062 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to extensin-like
protein [Lycopersicon esculentum] gi|5917664|gb|AAD55979
Length = 391
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 103 YTRPQ*TAATWSRSSPRLCSFSARRCAPGPS 195
Y+ P+ A W P +CS++ CAP PS
Sbjct: 57 YSDPKNLTADWV--GPSVCSYTGIFCAPSPS 85
>At2g23530.1 68415.m02808 expressed protein ; expression supported
by MPSS
Length = 555
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -1
Query: 223 GATMVVCLQLMARVRTFSPKTNRGEGNFCSMLLQFTEVLCINAGFPSVV 77
G T C Q RT + N +G FC M+ ++L I GF +V
Sbjct: 159 GKTCHQCRQKTMGHRTQCSECNLVQGQFCDMVNMCLKLLRIQTGFVPLV 207
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,075,420
Number of Sequences: 28952
Number of extensions: 264385
Number of successful extensions: 786
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -