Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0851
         (608 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    27   0.12 
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    22   3.5  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   6.1  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   8.1  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   8.1  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 217 SESTGQATAASMSFG-VSANPKS*STRRLGQW 125
           S STGQ   A+ SFG V++ P S S+  LGQ+
Sbjct: 45  SISTGQRLPANFSFGQVNSPPSSTSSGSLGQF 76


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +1

Query: 49  PYLFKYNQICLFYHSCWVTGP 111
           PY ++Y Q    YH     GP
Sbjct: 40  PYYYQYLQNAALYHKLQFRGP 60


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 30  NFSLRFTIPIQIQPNMSLLPFVLGDW 107
           N SL   IPI +  +   + F+ G W
Sbjct: 282 NMSLLTVIPIHVWTSKEKISFLRGFW 307


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +3

Query: 453 GAAPETVESRLSSXRGSHHTAPRKVPRTARQGXE 554
           G +P T   +    +    TA  K PRTA  G +
Sbjct: 206 GRSPRTRRVKKPGAKQGAPTAEEKRPRTAFSGAQ 239


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 78  SLLPFVLGDWPRVRHNHWPSRLVDQDFGLALT 173
           S+LP    + P+   NH  + L D D  L +T
Sbjct: 27  SILPETALEAPKSPENHPETELSDSDCDLDVT 58


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,270
Number of Sequences: 336
Number of extensions: 2915
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)