Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0851
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    27   2.8  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    26   5.0  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    25   8.7  

>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 378 ASTKRRKTSTGIFQGSSSDVTPLPEGAAPETVESRLSSXRGSHHTA 515
           AS+ RR+    I +   +D++ +    A    E R  S RG H+ A
Sbjct: 484 ASSIRRRHPVNIQEDEDADISTVSLPEAAHLREERAESPRGGHYDA 529


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 64  YNQICLFYHSCWVTGPAFVTTTGPVVLLIKILD 162
           Y  I   YHS WVT  A+   + P V+L  +L+
Sbjct: 491 YFLIMFVYHSSWVTSNAY---SSPTVVLSTVLN 520


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 509 YRAXEGTPDGPSRGRSRKRLAPXXTXNPGSPV 604
           YR+   +PDG SR     R +P       SPV
Sbjct: 143 YRSRSRSPDGRSRSPDYDRRSPKRNHRSPSPV 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,352,244
Number of Sequences: 5004
Number of extensions: 45098
Number of successful extensions: 131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)