Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0851
(608 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0385 + 33552382-33552538,33553059-33553559,33553633-33554156 32 0.41
01_06_1801 - 39954425-39954533,39955289-39955578,39955786-399568... 30 1.2
12_01_0636 + 5363436-5363848,5364041-5364354,5364792-5364817 28 5.0
01_05_0583 + 23420160-23420480 28 5.0
06_03_0461 - 21026440-21026617,21027918-21028127,21028920-21029326 28 6.7
02_05_0308 - 27754340-27754634,27755591-27755696,27755781-277558... 28 6.7
01_01_0008 + 34743-34939,35027-35072,35517-35668,35818-35877,365... 28 6.7
10_07_0190 + 13931399-13931600,13931720-13932003,13932158-13933303 27 8.8
04_04_0139 - 23068868-23069280,23069729-23069831,23070221-23070562 27 8.8
>03_06_0385 + 33552382-33552538,33553059-33553559,33553633-33554156
Length = 393
Score = 31.9 bits (69), Expect = 0.41
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 441 PLPEGAAPETVESRLSSXRGSHHTAPRKVPRTARQGXEAXKGW 569
P P A P+ ++ G+ TAPRKV +T G + GW
Sbjct: 39 PAPAHAPPQPKDAEGLLINGNFETAPRKVNKTLIVGRHSLPGW 81
>01_06_1801 - 39954425-39954533,39955289-39955578,39955786-39956838,
39956998-39957263,39957345-39957420,39957525-39957605,
39957676-39957831,39958565-39958669,39958761-39959367,
39959514-39959585,39959802-39959953,39960063-39960240,
39960642-39960745,39960822-39960953,39961036-39961132,
39961280-39961407,39961533-39961592,39962799-39962918,
39963011-39963091,39963173-39963361,39963826-39964024,
39964177-39964257,39964398-39964588,39965226-39965382,
39965986-39966119,39966266-39966334,39966434-39966481,
39966572-39966646,39967112-39967192,39967399-39967461,
39967564-39967623,39967754-39967795,39968777-39968902,
39969027-39969176
Length = 1843
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Frame = +3
Query: 375 KASTKRRK-TSTGIFQGSSS---DVTPLPEGA--APETVESRLSSXRGSHHTAPRKVPRT 536
K TK K T+ G+ Q SS D L + A +T + L++ G+ HTAPRKV +
Sbjct: 1382 KEDTKSGKSTNRGVTQQGSSVPVDKEVLSQAADGVQDTTSNSLAASNGNLHTAPRKVSAS 1441
Query: 537 ARQ 545
+++
Sbjct: 1442 SQK 1444
>12_01_0636 + 5363436-5363848,5364041-5364354,5364792-5364817
Length = 250
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 186 LAAVACPVLSEDYFRPWRQLAAALVTSVPA 275
LA V+ ED+ PW+ +AAA+ + PA
Sbjct: 122 LAPFTVFVVDEDHLLPWQHIAAAVTSGGPA 151
>01_05_0583 + 23420160-23420480
Length = 106
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -1
Query: 299 GTCPCRPLCWNRGHECSRELSPWS-EVVFGEHWTGDGSQHVVRG*RQSKILINKTT 135
G C L W+R C + WS E FG W ++ +V Q++I + T+
Sbjct: 25 GACSRASLAWSRSGGCDAQNGRWSTEKWFGIVWRDGNAKEIVVTLTQTEIAMVVTS 80
>06_03_0461 - 21026440-21026617,21027918-21028127,21028920-21029326
Length = 264
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 476 FHSLRRRAFRQRRNVGRTALKYTRARLSSLRA 381
+HS + RQ ++G+TA++Y R ++L A
Sbjct: 197 YHSWEKLILRQSPDIGKTAVQYKSERRAALEA 228
>02_05_0308 -
27754340-27754634,27755591-27755696,27755781-27755855,
27756039-27757410
Length = 615
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -3
Query: 351 VFTEISSGEKCCTSRLTWNLSLSAFMLEPRS 259
+F ++S GE+C ++ T+N+ +SA + R+
Sbjct: 401 LFEKMSKGEECLPNQDTYNIIISAMFMRKRA 431
>01_01_0008 +
34743-34939,35027-35072,35517-35668,35818-35877,
36594-36818,36892-37033,37276-37326,37434-37525,
38319-38445,38670-38751,38939-39046,39135-39189,
39456-39602,39703-39781,39885-40007
Length = 561
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 572 GPTFXGFXPLTGRPGYLPXRGMVR 501
GP G P+ G G +P RGMVR
Sbjct: 527 GPISGGRAPIYGAAGKMPDRGMVR 550
>10_07_0190 + 13931399-13931600,13931720-13932003,13932158-13933303
Length = 543
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +3
Query: 417 QGSSSDVTPLPEGAAPETVESRLSSXRGSHH--TAPRKVPRTARQGXE 554
QGSS G+AP + R S +G HH ++P + A G +
Sbjct: 474 QGSSPVAAAAASGSAPAGHDGRRGSLQGGHHGSSSPTSLAAAAATGDD 521
>04_04_0139 - 23068868-23069280,23069729-23069831,23070221-23070562
Length = 285
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -1
Query: 356 RQSSPKSLPARSAARP-D*LGTCPCRPLCWNRGHECSRELSP 234
R+++P +LP R AARP L CP R + R L+P
Sbjct: 23 RRATPLALPRRGAARPLASLAQCPARGHSPSPRRAAGRALAP 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,555,224
Number of Sequences: 37544
Number of extensions: 353868
Number of successful extensions: 1257
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1257
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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