Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0851
         (608 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)                 35   0.059
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)                   33   0.18 
SB_25427| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.24 
SB_47924| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.32 
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)                 31   0.73 
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)                       31   0.97 
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.97 
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)                 31   0.97 
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)                 31   0.97 
SB_55739| Best HMM Match : Protamine_P2 (HMM E-Value=1.9)              30   1.3  
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)                 29   2.2  
SB_12579| Best HMM Match : zf-C2H2 (HMM E-Value=5.4e-28)               28   5.1  
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)                   28   6.8  
SB_53052| Best HMM Match : U79_P34 (HMM E-Value=2.7)                   28   6.8  
SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16)                28   6.8  
SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
          Length = 185

 Score = 34.7 bits (76), Expect = 0.059
 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 284 DKDKFQV-NLDVQHFSPEEISVKTADGYIVV 373
           D DKFQ+  LDV+ F PEEI+ K  +G I V
Sbjct: 2   DADKFQIATLDVREFKPEEITCKVENGKIKV 32



 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 284 DKDKFQVNLDVQHFSPEEISVK 349
           D  KF + LDV  F PEE+ VK
Sbjct: 96  DDTKFTLALDVSDFKPEEVDVK 117


>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
          Length = 210

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +2

Query: 242 TRGCTRDLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVV 373
           TR C+    + ++ DK +    LDV+++ PEEIS+K   G I +
Sbjct: 24  TRNCSLAANTEMEGDKVEI-ATLDVKNYRPEEISLKVEHGRIKI 66


>SB_25427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1198

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
 Frame = +3

Query: 279  RPTRTSSKSIWTCSTSRRKRFR*RLPMGTSWWKASTKRRK-----TSTGIFQGSSSDVTP 443
            R   TSS S  T ++S     + R PM  S    ++K R      TS+   + S +D++P
Sbjct: 828  RSQSTSSSSWSTTTSSNHSSVQSRGPMRVSIHSVTSKPRSPGSTSTSSNHLETSETDLSP 887

Query: 444  LPEGAAPETVESRLSSXRGSHH 509
            L   ++P+   S LSS   S H
Sbjct: 888  LLPPSSPDCSSSGLSSSAFSAH 909


>SB_47924| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 417 QGSSSDVTPLPEGAAPETVESRLSSXRGSHHTAPRKV 527
           +GSS  V P+P    P+T E    +   S HT P  V
Sbjct: 190 KGSSQSVKPMPSDTVPDTAEDMSQNSDDSFHTPPGSV 226


>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
          Length = 259

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 254 TRDLGSSIKADKDKFQVNLDVQHFSPEEISVK 349
           T++  S+   D  KF + LDV  F PEE+ VK
Sbjct: 14  TKENQSAATKDDTKFTLALDVSDFKPEEVDVK 45


>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
          Length = 424

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 13/32 (40%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +2

Query: 281 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVV 373
           A+++K ++  LDV+ + PEEIS K  +G++ V
Sbjct: 2   ANENKLEIAKLDVREYRPEEISFKVENGFVKV 33



 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +2

Query: 290 DKFQV-NLDVQHFSPEEISVKTADGYIVV 373
           D+ ++  LDV+ + PEEIS K  +G++ V
Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGFVKV 267


>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 760

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 13/32 (40%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +2

Query: 281 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVV 373
           A+++K ++  LDV+ + PEEIS K  +G++ V
Sbjct: 2   ANENKLEIAKLDVREYRPEEISFKVENGFVKV 33


>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
          Length = 190

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 13/32 (40%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +2

Query: 281 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVV 373
           A+++K ++  LDV+ + PEEIS K  +G++ V
Sbjct: 2   ANENKLEIAKLDVREYRPEEISFKVENGFVKV 33


>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
          Length = 190

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 13/32 (40%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +2

Query: 281 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVV 373
           A+++K ++  LDV+ + PEEIS K  +G++ V
Sbjct: 2   ANENKLEIAKLDVREYRPEEISFKVENGFVKV 33


>SB_55739| Best HMM Match : Protamine_P2 (HMM E-Value=1.9)
          Length = 678

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
 Frame = +3

Query: 366 SWWKASTKRRKTSTGIFQGSSSDVTPLPEGAAPETVESR-LSSXRGSHH---TAPRKVPR 533
           SW    +   +  +  F  S+SD +PLP      T++ R L S R +HH   T+ R +  
Sbjct: 520 SWDSEESLHVRPLSEQFYDSASDTSPLPRKLRSATLDDRQLPSRRATHHGRRTSQRSMDG 579

Query: 534 TAR-QGXE 554
           +A  QG E
Sbjct: 580 SAHAQGDE 587


>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
          Length = 189

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 278 KADKDKFQVNLDVQHFSPEEISVKTADGYIVV 373
           KA +DKF + +DV  F PE I V+     ++V
Sbjct: 92  KAKEDKFSMAIDVAGFPPESIKVQVLGNELLV 123



 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 444 LPEGAAPETVESRLSSXRGSHHTAPRKVPR 533
           LPEG  PE V SR+S+    H  A + +P+
Sbjct: 56  LPEGIDPENVTSRISNHGHLHIEARKALPK 85



 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 281 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVV 373
           A K+  ++  LDV+ + PEEIS K  +G + V
Sbjct: 2   AKKNTLEIAKLDVKEYRPEEISFKVENGVVKV 33


>SB_12579| Best HMM Match : zf-C2H2 (HMM E-Value=5.4e-28)
          Length = 400

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 193 PSPVQCSPKTTSDHGDNSRLHS*PRFQHKGRQGQVP 300
           P P+    K+++  G  S  HS P ++H   QG  P
Sbjct: 66  PDPLTYEQKSSAMSGQQSFYHSFPAYRHMASQGFAP 101


>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
          Length = 695

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 266 GSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVV 373
           G+  ++  DKF + +DV+ F PE I V+     ++V
Sbjct: 89  GAKKESKDDKFSMAMDVKGFPPEAIKVQVLGNELLV 124



 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 284 DKDKFQV-NLDVQHFSPEEISVKTADGYIVV 373
           +++K ++  LDV+ + PEEIS K  +G + V
Sbjct: 4   NENKLEIAKLDVREYRPEEISFKVENGVVKV 34


>SB_53052| Best HMM Match : U79_P34 (HMM E-Value=2.7)
          Length = 1130

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/65 (23%), Positives = 28/65 (43%)
 Frame = +3

Query: 279 RPTRTSSKSIWTCSTSRRKRFR*RLPMGTSWWKASTKRRKTSTGIFQGSSSDVTPLPEGA 458
           RPT    + +W  +    K +  +  +G S  + ST  R+    +F G+S  +  + +  
Sbjct: 534 RPTPLKYRDVWRAAQVESKVWNSKENLGASLMRTSTCVRRCEDSVFGGASDAIDLVRKYG 593

Query: 459 APETV 473
            P  V
Sbjct: 594 FPTNV 598


>SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 652

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 251 SRELSPWSEVVFGEHWTGDGSQHVVR 174
           SR  SP   + FG   TGDG QH+V+
Sbjct: 102 SRTPSPSDSIDFGAVETGDGLQHLVK 127


>SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16)
          Length = 411

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 127 TGPVVLLIKILDWR*PRTTCWLPSPVQCSPKTTSDH 234
           TG + +    L+   PR +C  P PV  SP+  + H
Sbjct: 253 TGEIEMKDLTLEIPTPRESCQFPGPVSVSPRVATTH 288


>SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 649

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -1

Query: 434 VGRTALKYTRARLSSLRACLPPRCTHRQSSPKSL 333
           +    +K    ++S  RAC+ P C H  + P ++
Sbjct: 112 ISAAEVKCVHCKVSLCRACIGPHCEHMPTQPHTI 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,558,628
Number of Sequences: 59808
Number of extensions: 379417
Number of successful extensions: 1041
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)