Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0851
(608 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M14334-1|AAA28070.1| 144|Caenorhabditis elegans protein ( C.ele... 38 0.007
U39645-6|AAA80366.1| 368|Caenorhabditis elegans Heat shock prot... 36 0.017
K03273-3|AAA28067.1| 144|Caenorhabditis elegans heat shock prot... 36 0.023
L15188-10|AAA27953.1| 110|Caenorhabditis elegans Heat shock pro... 35 0.040
X01577-1|CAA25732.1| 97|Caenorhabditis elegans protein ( C. el... 34 0.091
AC006774-2|AAF60616.1| 143|Caenorhabditis elegans Heat shock pr... 34 0.091
Z77657-3|CAB01147.1| 147|Caenorhabditis elegans Hypothetical pr... 32 0.28
X01576-1|CAA25731.1| 135|Caenorhabditis elegans C-terminal frag... 32 0.28
U64837-7|AAB04841.1| 143|Caenorhabditis elegans Heat shock prot... 32 0.28
U64837-6|AAB04840.1| 143|Caenorhabditis elegans Heat shock prot... 32 0.28
K03273-2|AAA28069.1| 143|Caenorhabditis elegans heat shock prot... 32 0.28
U41109-5|AAB37035.1| 149|Caenorhabditis elegans Heat shock prot... 31 0.85
U41109-4|AAQ62453.1| 148|Caenorhabditis elegans Heat shock prot... 31 0.85
AC024830-3|AAF59604.3| 180|Caenorhabditis elegans Hypothetical ... 31 0.85
U29612-8|AAW57827.1| 108|Caenorhabditis elegans Heat shock prot... 30 1.5
U29612-7|AAO61437.1| 205|Caenorhabditis elegans Heat shock prot... 30 1.5
U29612-6|AAA68804.1| 219|Caenorhabditis elegans Heat shock prot... 30 1.5
M31339-1|AAA28072.1| 22|Caenorhabditis elegans hsp16-48 protein. 30 1.5
K03273-1|AAA28066.1| 146|Caenorhabditis elegans heat shock prot... 29 2.0
Z70212-4|CAA94164.1| 322|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z68342-8|CAA92771.1| 110|Caenorhabditis elegans Hypothetical pr... 28 6.0
U92044-1|AAC47521.1| 110|Caenorhabditis elegans heat shock prot... 28 6.0
U64837-8|AAB04842.1| 145|Caenorhabditis elegans Heat shock prot... 28 6.0
U64837-5|AAB04839.1| 145|Caenorhabditis elegans Heat shock prot... 28 6.0
L14324-3|AAA28185.1| 851|Caenorhabditis elegans Abnormal nucleo... 28 6.0
K03273-4|AAA28068.1| 145|Caenorhabditis elegans heat shock prot... 28 6.0
AF047027-1|AAC14263.1| 851|Caenorhabditis elegans B box zinc fi... 28 6.0
Z54235-1|CAA90971.1| 416|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z47357-12|CAA87429.2| 205|Caenorhabditis elegans Hypothetical p... 27 7.9
Z30974-3|CAA83227.2| 205|Caenorhabditis elegans Hypothetical pr... 27 7.9
AF045635-1|AAU87830.1| 480|Caenorhabditis elegans Nuclear hormo... 27 7.9
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 27 7.9
>M14334-1|AAA28070.1| 144|Caenorhabditis elegans protein (
C.elegans heat shockprotein genes 16-41 and 16-2,
complete cds, flanked byCeRep16 repetitive elements. ).
Length = 144
Score = 37.5 bits (83), Expect = 0.007
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +2
Query: 260 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQF 427
++G I D+ KF V LDV HF PE + +K DG + Y+ R F
Sbjct: 43 NIGEQIVNDESKFSVQLDVSHFKPENLKIK-LDGRELKIEGIQETKSEHGYLKRSF 97
>U39645-6|AAA80366.1| 368|Caenorhabditis elegans Heat shock protein
protein 43 protein.
Length = 368
Score = 36.3 bits (80), Expect = 0.017
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +2
Query: 260 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVV 373
D+ S++ D +F V++D F PEEI VKT D +++
Sbjct: 102 DVNSNVVNDDRRFAVDMDCYQFRPEEIQVKTLDDTLMI 139
>K03273-3|AAA28067.1| 144|Caenorhabditis elegans heat shock protein
16-48a protein.
Length = 144
Score = 35.9 bits (79), Expect = 0.023
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 260 DLGSSIKADKDKFQVNLDVQHFSPEEISVK 349
++G I D+ KF V LDV HF PE++ ++
Sbjct: 43 NIGEQIVNDESKFSVQLDVSHFKPEDLKIE 72
>L15188-10|AAA27953.1| 110|Caenorhabditis elegans Heat shock
protein protein 12.2 protein.
Length = 110
Score = 35.1 bits (77), Expect = 0.040
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = +2
Query: 287 KDKFQVNLDVQHFSPEEISVKTADGYIVV 373
K+KF+V LDVQ F+P+EI VK + +++
Sbjct: 31 KEKFEVGLDVQFFTPKEIEVKVSGQELLI 59
>X01577-1|CAA25732.1| 97|Caenorhabditis elegans protein ( C.
elegans mRNA 3'-regionfor heat shock protein hsp 16-41
(exon 2).somal genes.).
Length = 97
Score = 33.9 bits (74), Expect = 0.091
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 284 DKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQF 427
D+ KF V LDV HF PE + +K DG + Y+ R F
Sbjct: 4 DESKFSVQLDVSHFKPENLKIK-LDGRELKIEGIQETKSEHGYLKRSF 50
>AC006774-2|AAF60616.1| 143|Caenorhabditis elegans Heat shock
protein protein 16.41 protein.
Length = 143
Score = 33.9 bits (74), Expect = 0.091
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 284 DKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQF 427
D+ KF V LDV HF PE + +K DG + Y+ R F
Sbjct: 50 DESKFSVQLDVSHFKPENLKIK-LDGRELKIEGIQETKSEHGYLKRSF 96
>Z77657-3|CAB01147.1| 147|Caenorhabditis elegans Hypothetical
protein F08H9.4 protein.
Length = 147
Score = 32.3 bits (70), Expect = 0.28
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +2
Query: 269 SSIKADKDKFQVNLDVQHFSPEEISV 346
S I DKF VNL+V +F PEE+ V
Sbjct: 43 SEIMNSNDKFAVNLNVSNFKPEELKV 68
>X01576-1|CAA25731.1| 135|Caenorhabditis elegans C-terminal
fragment of hsp 16-48 protein.
Length = 135
Score = 32.3 bits (70), Expect = 0.28
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 284 DKDKFQVNLDVQHFSPEEISVK 349
D+ KF V LDV HF PE++ ++
Sbjct: 42 DESKFSVQLDVSHFKPEDLKIE 63
>U64837-7|AAB04841.1| 143|Caenorhabditis elegans Heat shock protein
protein 16.49 protein.
Length = 143
Score = 32.3 bits (70), Expect = 0.28
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 284 DKDKFQVNLDVQHFSPEEISVK 349
D+ KF V LDV HF PE++ ++
Sbjct: 50 DESKFSVQLDVSHFKPEDLKIE 71
>U64837-6|AAB04840.1| 143|Caenorhabditis elegans Heat shock protein
protein 16.48 protein.
Length = 143
Score = 32.3 bits (70), Expect = 0.28
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 284 DKDKFQVNLDVQHFSPEEISVK 349
D+ KF V LDV HF PE++ ++
Sbjct: 50 DESKFSVQLDVSHFKPEDLKIE 71
>K03273-2|AAA28069.1| 143|Caenorhabditis elegans heat shock protein
16-48 protein.
Length = 143
Score = 32.3 bits (70), Expect = 0.28
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 284 DKDKFQVNLDVQHFSPEEISVK 349
D+ KF V LDV HF PE++ ++
Sbjct: 50 DESKFSVQLDVSHFKPEDLKIE 71
>U41109-5|AAB37035.1| 149|Caenorhabditis elegans Heat shock protein
protein 17,isoform a protein.
Length = 149
Score = 30.7 bits (66), Expect = 0.85
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +2
Query: 293 KFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFV 430
++ V++DV F PEE+ V D +++ + R FV
Sbjct: 56 EYNVSVDVSQFEPEELKVNIVDNQLIIEGKHNEKTDKYGQVERHFV 101
>U41109-4|AAQ62453.1| 148|Caenorhabditis elegans Heat shock protein
protein 17,isoform b protein.
Length = 148
Score = 30.7 bits (66), Expect = 0.85
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +2
Query: 293 KFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFV 430
++ V++DV F PEE+ V D +++ + R FV
Sbjct: 55 EYNVSVDVSQFEPEELKVNIVDNQLIIEGKHNEKTDKYGQVERHFV 100
>AC024830-3|AAF59604.3| 180|Caenorhabditis elegans Hypothetical
protein Y55F3BR.6 protein.
Length = 180
Score = 30.7 bits (66), Expect = 0.85
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +3
Query: 375 KASTKRRKTSTGIFQGSSSDVTPLPEGAAPETVESRLSSXRGSHHTAPRKVPRTARQG 548
+ S ++ + G + + PLP+ APE+V+S+L++ H T K P ++G
Sbjct: 107 EGSHGEKEDTYGTIESTFKRRFPLPKAVAPESVQSQLTA--DGHLTIDAKAPEPKQEG 162
>U29612-8|AAW57827.1| 108|Caenorhabditis elegans Heat shock protein
protein 25,isoform c protein.
Length = 108
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 278 KADKDKFQVNLDVQHFSPEEISVKTADGYIVV 373
++D ++ DV ++ PEE++VKT D ++V
Sbjct: 22 ESDGKTLRLRFDVANYKPEEVTVKTIDNRLLV 53
>U29612-7|AAO61437.1| 205|Caenorhabditis elegans Heat shock protein
protein 25,isoform b protein.
Length = 205
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 278 KADKDKFQVNLDVQHFSPEEISVKTADGYIVV 373
++D ++ DV ++ PEE++VKT D ++V
Sbjct: 119 ESDGKTLRLRFDVANYKPEEVTVKTIDNRLLV 150
>U29612-6|AAA68804.1| 219|Caenorhabditis elegans Heat shock protein
protein 25,isoform a protein.
Length = 219
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 278 KADKDKFQVNLDVQHFSPEEISVKTADGYIVV 373
++D ++ DV ++ PEE++VKT D ++V
Sbjct: 133 ESDGKTLRLRFDVANYKPEEVTVKTIDNRLLV 164
>M31339-1|AAA28072.1| 22|Caenorhabditis elegans hsp16-48 protein.
Length = 22
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 284 DKDKFQVNLDVQHFSPEE 337
D+ KF V LDV HF PE+
Sbjct: 5 DESKFSVQLDVSHFKPED 22
>K03273-1|AAA28066.1| 146|Caenorhabditis elegans heat shock protein
16-1 protein.
Length = 146
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 245 RGCTRDLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGY 364
RG + I + KF +NL+V F PE++ + DG+
Sbjct: 34 RGSPSESSEQIVNNDQKFAINLNVSQFKPEDLKI-NLDGH 72
>Z70212-4|CAA94164.1| 322|Caenorhabditis elegans Hypothetical
protein R04D3.6 protein.
Length = 322
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 31 TFLCVLPYLFKYNQICLFYHSCWVTG 108
T CVLPY+F Y I Y+ C +TG
Sbjct: 243 TIQCVLPYVF-YIPIYTLYYYCLLTG 267
>Z68342-8|CAA92771.1| 110|Caenorhabditis elegans Hypothetical
protein F38E11.2 protein.
Length = 110
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 284 DKDKFQVNLDVQHFSPEEISVK 349
D D F+V L+ +F P+EI VK
Sbjct: 30 DDDHFEVGLEAHNFLPKEIEVK 51
>U92044-1|AAC47521.1| 110|Caenorhabditis elegans heat shock protein
12.6 protein.
Length = 110
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 284 DKDKFQVNLDVQHFSPEEISVK 349
D D F+V L+ +F P+EI VK
Sbjct: 30 DDDHFEVGLEAHNFLPKEIEVK 51
>U64837-8|AAB04842.1| 145|Caenorhabditis elegans Heat shock protein
protein 16.11 protein.
Length = 145
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 269 SSIKADKDKFQVNLDVQHFSPEEISVKTADGY 364
S I + KF +NL+V F PE++ + DG+
Sbjct: 41 SEIVNNDQKFAINLNVSQFKPEDLKI-NLDGH 71
>U64837-5|AAB04839.1| 145|Caenorhabditis elegans Heat shock protein
protein 16.1 protein.
Length = 145
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 269 SSIKADKDKFQVNLDVQHFSPEEISVKTADGY 364
S I + KF +NL+V F PE++ + DG+
Sbjct: 41 SEIVNNDQKFAINLNVSQFKPEDLKI-NLDGH 71
>L14324-3|AAA28185.1| 851|Caenorhabditis elegans Abnormal nucleoli
protein 1 protein.
Length = 851
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -1
Query: 161 SKILINKTTGPVVVTNAGPVTQHEW*KRHIWLYLNRYGKTQRKVRLNASQ 12
+++ +N+TTG VVT P Q I +Y N+YG+ RK N Q
Sbjct: 637 NRVAVNRTTGDFVVTERSPTHQ-------IQVY-NQYGQFLRKFGANILQ 678
>K03273-4|AAA28068.1| 145|Caenorhabditis elegans heat shock protein
16-1a protein.
Length = 145
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 269 SSIKADKDKFQVNLDVQHFSPEEISVKTADGY 364
S I + KF +NL+V F PE++ + DG+
Sbjct: 41 SEIVNNDQKFAINLNVSQFKPEDLKI-NLDGH 71
>AF047027-1|AAC14263.1| 851|Caenorhabditis elegans B box zinc
finger protein Ncl-1 protein.
Length = 851
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -1
Query: 161 SKILINKTTGPVVVTNAGPVTQHEW*KRHIWLYLNRYGKTQRKVRLNASQ 12
+++ +N+TTG VVT P Q I +Y N+YG+ RK N Q
Sbjct: 637 NRVAVNRTTGDFVVTERSPTHQ-------IQVY-NQYGQFLRKFGANILQ 678
>Z54235-1|CAA90971.1| 416|Caenorhabditis elegans Hypothetical
protein C09G9.1 protein.
Length = 416
Score = 27.5 bits (58), Expect = 7.9
Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 7/102 (6%)
Frame = +3
Query: 207 VLSEDYFRPWRQLAAALVTS-VPA*RPTRTSSKSIWTCS---TSRRKRFR*RLPMGTSWW 374
VLS F LAA L+ + +PA PT S + S SR ++ L +S
Sbjct: 108 VLSSTLFNFGSLLAAVLIKALIPAKSPTWLKSLTATVLSGYLLSRAAKYMGILDHRSSRG 167
Query: 375 KASTKRRKTS---TGIFQGSSSDVTPLPEGAAPETVESRLSS 491
S R S T +++VTP P APET S S+
Sbjct: 168 SVSPARSVLSRRQTASRSSHAAEVTPPPASYAPETPRSVAST 209
>Z47357-12|CAA87429.2| 205|Caenorhabditis elegans Hypothetical
protein ZK1128.7 protein.
Length = 205
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 296 FQVNLDVQHFSPEEISVKTAD 358
F + +DV HF PEEI V D
Sbjct: 104 FTIEIDVFHFMPEEIKVVLTD 124
>Z30974-3|CAA83227.2| 205|Caenorhabditis elegans Hypothetical
protein ZK1128.7 protein.
Length = 205
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 296 FQVNLDVQHFSPEEISVKTAD 358
F + +DV HF PEEI V D
Sbjct: 104 FTIEIDVFHFMPEEIKVVLTD 124
>AF045635-1|AAU87830.1| 480|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 76 protein.
Length = 480
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 467 LRRRAFRQRRNVGRTALKYTRARLSSLRACLPPRCTHRQSSPKSLP-ARSAARP 309
L RR + +R VG + R S+ RAC RC +P S+ R + +P
Sbjct: 109 LSRRYYCRRDPVGNSLCPLDRRHRSNCRACRYVRCIDMGMNPSSVQNLRDSIKP 162
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 524 GTPDGPSRGRSRKRLAPXXTXNPGSP 601
G+P P RG R R P + PG P
Sbjct: 188 GSPGNPGRGGQRSRGLPGPSGRPGPP 213
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,339,701
Number of Sequences: 27780
Number of extensions: 276360
Number of successful extensions: 947
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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