Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0851
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.77 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.3  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    23   1.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   1.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.1  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   7.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -2

Query: 283  GLYA-GTEVTSAAASCLHGLK*SSESTGQATA-ASMSFGVSANP 158
            G+Y   T++TS++ + LHGLK  +  + Q  A  S   GV + P
Sbjct: 1127 GIYTKDTKITSSSETILHGLKKYTNYSMQVLAFTSGGDGVKSAP 1170


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +1

Query: 61  KYNQICLFYHSCWVTGPAFVTTTGPVVLLIKILDW 165
           +Y+ + +++H     G   +   GP VLL+ +L W
Sbjct: 199 EYSMLLVYFHLQRHMGNFLIQVYGPCVLLV-VLSW 232


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 462 PETVESRLSSXRGSHHTAPRKVPRTARQGXE 554
           P T   + S  RG+  T   K PRTA  G +
Sbjct: 1   PRTRRVKRSDGRGNGGTPEEKRPRTAFSGEQ 31


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 373 HHDVPIGSLHRNLFRREVLHVQ 308
           H D+PI   H +L   +VL+ Q
Sbjct: 64  HRDLPIYQSHHHLHHHQVLYQQ 85


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -2

Query: 319 LHVQIDLELVLVGLYAGTEVTSAAASCLHGLK*SSESTGQATAASMSFGVSANPK 155
           LH+QI + +    + AG         CL G   ++ S  +AT+ +M   +S + K
Sbjct: 513 LHLQIRVGVHSGAVVAGIVGLKMPRYCLFGDSVNTASRMEATSQAMQIHISQSTK 567


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/36 (27%), Positives = 14/36 (38%)
 Frame = +1

Query: 208  CSPKTTSDHGDNSRLHS*PRFQHKGRQGQVPSQSGR 315
            C  K   DH         P+ Q + +Q Q P Q  +
Sbjct: 1487 CDSKLIVDHSSQKTQQQQPQQQQQQQQQQQPQQQSQ 1522


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 387 KRRKTSTGIFQGSSSDVTPLPEGAAPETV 473
           K++K+ T +   + +D+T    G  PE V
Sbjct: 74  KKKKSKTILAVNAEADITLKNAGTPPEAV 102


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 387 KRRKTSTGIFQGSSSDVTPLPEGAAPETV 473
           K++K+ T +   + +D+T    G  PE V
Sbjct: 74  KKKKSKTILAVNAEADITLKNAGTPPEAV 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,361
Number of Sequences: 438
Number of extensions: 3167
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)