Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0851
         (608 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27980.1 68415.m03391 expressed protein                             27   7.4  
At1g27980.1 68414.m03427 pyridoxal-dependent decarboxylase famil...    27   9.7  
At1g26140.1 68414.m03191 hypothetical protein                          27   9.7  

>At2g27980.1 68415.m03391 expressed protein
          Length = 1037

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 251 CTRDLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVV 373
           C R   S +K +  K +VN D  H +PE+ ++ + D  + V
Sbjct: 206 CKRLTRSMLKVEGIKSEVNADDDHVNPEKDAIGSEDNCVDV 246


>At1g27980.1 68414.m03427 pyridoxal-dependent decarboxylase family
           protein similar to sphingosine-1-phosphate lyase [Homo
           sapiens] GI:10129683; contains Pfam profile PF00282:
           Pyridoxal-dependent decarboxylase conserved domain
          Length = 544

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 572 GPTFXGFXPLTGRPGYLPXRGMV 504
           GP   G  P+ G  G +P RGMV
Sbjct: 510 GPITGGLAPIYGAAGKMPDRGMV 532


>At1g26140.1 68414.m03191 hypothetical protein
          Length = 162

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 254 CSRELSPWSEVVFGEHWTGDG 192
           C + L P  E V  EHW+G+G
Sbjct: 94  CGKTLQPTMEDVKEEHWSGNG 114


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,732,195
Number of Sequences: 28952
Number of extensions: 256799
Number of successful extensions: 715
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)