Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0848
         (418 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   4.8  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    20   8.4  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    20   8.4  

>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 217 LAATPE*GRKPL*XLXKRCSCYYGMSQLXKS 309
           L   P+  +KPL  +    SCY   ++L +S
Sbjct: 214 LLRLPKFKKKPLLCVVSTLSCYLERTELLRS 244


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 112 FYRISEXCRFIYLKCL 159
           FYR  +  +FI++K +
Sbjct: 51  FYRAKDYAKFIHIKAV 66


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 112 FYRISEXCRFIYLKCL 159
           FYR  +  +FI++K +
Sbjct: 51  FYRAKDYAKFIHIKAV 66


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,472
Number of Sequences: 336
Number of extensions: 1235
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9174063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)