Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0848
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    30   0.13 
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb...    26   2.0  
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    25   6.2  
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    25   6.2  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   8.2  

>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 30.3 bits (65), Expect = 0.13
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = +3

Query: 189 KLVGKTALITGCNTGIGKET 248
           +L GKT LITG ++GIGK T
Sbjct: 3   RLDGKTILITGASSGIGKST 22


>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 339

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 192 LVGKTALITGCNTGIGKETXL 254
           L GK AL+TG + GIG  T L
Sbjct: 40  LTGKVALVTGSSGGIGYVTAL 60


>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 189 KLVGKTALITGCNTGIGKETXLIXTXE 269
           KL  K  L+TG ++GIGK   ++   E
Sbjct: 39  KLAEKKTLLTGGDSGIGKAAAVMFARE 65


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 180 STVKLVGKTALITGCNTGIG 239
           S   L GKT LITG + GIG
Sbjct: 3   SMFSLKGKTTLITGGSGGIG 22


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 141 YLFKMPLFXGRCLSTVKLVGKTALITGCN 227
           +L K  L+  RC+STV L+     +  CN
Sbjct: 57  FLAKCFLYILRCMSTVSLLSSAHKMNCCN 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,354,594
Number of Sequences: 5004
Number of extensions: 19367
Number of successful extensions: 39
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)