Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0848
(418 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1589 + 27948546-27948548,27948890-27948958,27949235-279493... 31 0.28
12_01_0922 - 9123287-9124088,9124184-9124273,9124354-9124383,912... 31 0.49
04_03_0828 - 20118303-20119086,20119197-20119240 29 1.5
07_03_1595 + 28007003-28007031,28007978-28008560,28009088-28009399 29 2.0
07_03_1590 + 27960241-27961104 29 2.0
07_03_1594 + 28004256-28004287,28004399-28005290 28 2.6
07_03_1114 + 24072771-24072858,24072960-24073176,24075101-24075974 28 2.6
07_03_1598 + 28019788-28019834,28020404-28021289 28 3.5
07_03_1587 + 27937243-27937251,27937813-27937872,27938007-279380... 28 3.5
06_03_0618 + 22798419-22798588,22798672-22798771,22798891-227989... 28 3.5
07_03_1591 + 27967065-27967090,27967236-27968054,27984940-279850... 27 4.6
03_02_0500 - 8915300-8915349,8915567-8915717,8916308-8916516,891... 27 4.6
11_04_0130 + 13790349-13790431,13790590-13790704,13790832-13791053 27 6.0
07_03_1597 + 28016737-28016771,28016881-28017742 27 6.0
09_06_0350 + 22461592-22461935,22462788-22462867,22463171-224632... 27 8.0
04_01_0407 - 5350916-5351699,5351930-5351970 27 8.0
04_01_0406 - 5345149-5345935,5346302-5346339 27 8.0
>07_03_1589 +
27948546-27948548,27948890-27948958,27949235-27949335,
27949460-27950173,27951172-27951333,27951669-27952458
Length = 612
Score = 31.5 bits (68), Expect = 0.28
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +3
Query: 180 STVKLVGKTALITGCNTGIGKET 248
S VKL GK A+ITG +GIGK T
Sbjct: 55 SLVKLAGKVAVITGGASGIGKAT 77
Score = 26.6 bits (56), Expect = 8.0
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 192 LVGKTALITGCNTGIGKET 248
L GK A+ITG +GIGK T
Sbjct: 351 LAGKVAIITGGASGIGKVT 369
>12_01_0922 -
9123287-9124088,9124184-9124273,9124354-9124383,
9125379-9125590
Length = 377
Score = 30.7 bits (66), Expect = 0.49
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
Frame = +3
Query: 174 CLSTV----KLVGKTALITGCNTGIGKET 248
C STV +L GK A+ITG +GIGK T
Sbjct: 102 CFSTVSNLQRLAGKVAVITGAASGIGKAT 130
>04_03_0828 - 20118303-20119086,20119197-20119240
Length = 275
Score = 29.1 bits (62), Expect = 1.5
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +3
Query: 180 STVKLVGKTALITGCNTGIGKET 248
S KLVGK ALITG +GIG+ T
Sbjct: 12 SARKLVGKVALITGGASGIGECT 34
>07_03_1595 + 28007003-28007031,28007978-28008560,28009088-28009399
Length = 307
Score = 28.7 bits (61), Expect = 2.0
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 162 FXGRCLSTVKLVGKTALITGCNTGIGKET 248
F S+ KL GK A+ITG +GIG+ T
Sbjct: 29 FSSSASSSRKLDGKVAVITGAASGIGEAT 57
>07_03_1590 + 27960241-27961104
Length = 287
Score = 28.7 bits (61), Expect = 2.0
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 189 KLVGKTALITGCNTGIGKET 248
+L GK A+ITG +GIGK T
Sbjct: 23 RLAGKVAVITGAASGIGKAT 42
>07_03_1594 + 28004256-28004287,28004399-28005290
Length = 307
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 159 LFXGRCLSTVKLVGKTALITGCNTGIGKET 248
LF S+ +L GK A+ITG GIG+ T
Sbjct: 29 LFSSSASSSKRLEGKVAVITGAVGGIGEAT 58
>07_03_1114 + 24072771-24072858,24072960-24073176,24075101-24075974
Length = 392
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 180 STVKLVGKTALITGCNTGIGKET 248
S +L GK A+ITG +GIGK T
Sbjct: 124 SCQRLPGKVAVITGAASGIGKAT 146
>07_03_1598 + 28019788-28019834,28020404-28021289
Length = 310
Score = 27.9 bits (59), Expect = 3.5
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +3
Query: 180 STVKLVGKTALITGCNTGIGKET 248
S+ KL GK A+ITG +GIG+ T
Sbjct: 39 SSRKLDGKVAVITGAASGIGEAT 61
>07_03_1587 +
27937243-27937251,27937813-27937872,27938007-27938008,
27938208-27939012
Length = 291
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 192 LVGKTALITGCNTGIGKET 248
L GK A+ITG +GIGK T
Sbjct: 25 LAGKVAVITGAASGIGKAT 43
>06_03_0618 +
22798419-22798588,22798672-22798771,22798891-22798971,
22799131-22799180,22799302-22799452,22800027-22800083,
22800171-22800292,22800397-22800601
Length = 311
Score = 27.9 bits (59), Expect = 3.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 186 VKLVGKTALITGCNTGIGKET 248
++L GK L+TG N+GIG T
Sbjct: 30 IRLDGKNCLVTGANSGIGFAT 50
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 266 RGAXVIMACRSLXRADEAKADIEKSCNNIN 355
RGA V M CR+ R + A + I N+N
Sbjct: 57 RGATVYMLCRNKERGETALSQIRSKTGNMN 86
>07_03_1591 +
27967065-27967090,27967236-27968054,27984940-27985022,
27985590-27985744,27985956-27986461,27986551-27986703,
27987146-27987485,27987558-27987822,27987897-27988634,
27989734-27989779,27989849-27990223,27991511-27991567,
27991640-27992438
Length = 1453
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 189 KLVGKTALITGCNTGIGKET 248
+L GK A+ITG +GIGK T
Sbjct: 39 RLAGKVAVITGGASGIGKAT 58
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 162 FXGRCLSTVKLVGKTALITGCNTGIGKET 248
F + +L GK A+ITG +GIGK T
Sbjct: 1061 FFSAASDSQRLAGKVAVITGGASGIGKGT 1089
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 189 KLVGKTALITGCNTGIGK 242
+L GK A+ITG +GIGK
Sbjct: 1188 RLAGKVAVITGAASGIGK 1205
>03_02_0500 -
8915300-8915349,8915567-8915717,8916308-8916516,
8916592-8916808,8917515-8917722,8917839-8917939
Length = 311
Score = 27.5 bits (58), Expect = 4.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 192 LVGKTALITGCNTGIGKETXLIXTXEVLXLLWHVAAXKEQ 311
L GKTAL+TG GIG+ ++ L H + KE+
Sbjct: 19 LQGKTALVTGGTRGIGR--AVVEELAALGATVHTCSRKEE 56
>11_04_0130 + 13790349-13790431,13790590-13790704,13790832-13791053
Length = 139
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 192 LVGKTALITGCNTGIGKETXL 254
L G TAL+TG + GIG E L
Sbjct: 13 LAGATALVTGGSKGIGNEAEL 33
>07_03_1597 + 28016737-28016771,28016881-28017742
Length = 298
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 189 KLVGKTALITGCNTGIGKET 248
KL GK A+ITG +GIG+ T
Sbjct: 30 KLDGKVAVITGAASGIGEAT 49
>09_06_0350 +
22461592-22461935,22462788-22462867,22463171-22463273,
22463423-22463501,22464208-22464292,22464639-22464685,
22465217-22465375
Length = 298
Score = 26.6 bits (56), Expect = 8.0
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 198 GKTALITGCNTGIGKET 248
G TA++TG ++GIG ET
Sbjct: 31 GLTAIVTGASSGIGAET 47
>04_01_0407 - 5350916-5351699,5351930-5351970
Length = 274
Score = 26.6 bits (56), Expect = 8.0
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 189 KLVGKTALITGCNTGIG 239
KLVGK A+ITG +GIG
Sbjct: 14 KLVGKVAVITGGASGIG 30
>04_01_0406 - 5345149-5345935,5346302-5346339
Length = 274
Score = 26.6 bits (56), Expect = 8.0
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 189 KLVGKTALITGCNTGIG 239
KLVGK A+ITG +GIG
Sbjct: 13 KLVGKVAVITGGASGIG 29
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,556,967
Number of Sequences: 37544
Number of extensions: 117575
Number of successful extensions: 256
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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