Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0848
         (418 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47084| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   5e-06
SB_52724| Best HMM Match : adh_short (HMM E-Value=5.1e-08)             38   0.004
SB_14553| Best HMM Match : adh_short (HMM E-Value=4.2e-08)             38   0.004
SB_6722| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.041
SB_11966| Best HMM Match : adh_short (HMM E-Value=4.1e-32)             29   1.5  
SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.0  
SB_19040| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.7  
SB_16518| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.7  
SB_34617| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_20860| Best HMM Match : HTH_10 (HMM E-Value=4.1)                    28   3.6  
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)                       27   6.2  
SB_21622| Best HMM Match : adh_short (HMM E-Value=3.1e-05)             27   8.2  
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   27   8.2  
SB_35940| Best HMM Match : adh_short (HMM E-Value=0.00021)             27   8.2  
SB_26063| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_47084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 47.2 bits (107), Expect = 5e-06
 Identities = 21/40 (52%), Positives = 28/40 (70%)
 Frame = +3

Query: 135 SFYLFKMPLFXGRCLSTVKLVGKTALITGCNTGIGKETXL 254
           S +LF+  L   RC +TV+L GKT ++TG N+GIGK T L
Sbjct: 47  SIWLFRRYLVGRRCTNTVRLHGKTVIVTGANSGIGKATAL 86



 Score = 29.9 bits (64), Expect = 0.88
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +2

Query: 266 RGAXVIMACRSLXRADEAKADI 331
           RGA VIMACR L  A++A ++I
Sbjct: 91  RGARVIMACRDLESAEKAASEI 112


>SB_52724| Best HMM Match : adh_short (HMM E-Value=5.1e-08)
          Length = 316

 Score = 37.5 bits (83), Expect = 0.004
 Identities = 16/25 (64%), Positives = 18/25 (72%)
 Frame = +3

Query: 174 CLSTVKLVGKTALITGCNTGIGKET 248
           C S  +L GKT +ITG  TGIGKET
Sbjct: 29  CTSEARLDGKTVIITGATTGIGKET 53


>SB_14553| Best HMM Match : adh_short (HMM E-Value=4.2e-08)
          Length = 319

 Score = 37.5 bits (83), Expect = 0.004
 Identities = 16/25 (64%), Positives = 18/25 (72%)
 Frame = +3

Query: 174 CLSTVKLVGKTALITGCNTGIGKET 248
           C S  +L GKT +ITG  TGIGKET
Sbjct: 29  CTSEARLDGKTVIITGATTGIGKET 53


>SB_6722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 34.3 bits (75), Expect = 0.041
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = +3

Query: 174 CLSTVKLVGKTALITGCNTGIGKE 245
           C S  KL GKT +ITG N+GIG E
Sbjct: 64  CSSDEKLKGKTVIITGANSGIGME 87



 Score = 29.5 bits (63), Expect = 1.2
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 254 DXYXRGAXVIMACRSLXRADEAKADIEKSCNNIN 355
           D   R A VIMACR + +  +A A+I +S  N++
Sbjct: 91  DLAWRKARVIMACRDVHKGMKAAAEIVQSAGNMD 124


>SB_11966| Best HMM Match : adh_short (HMM E-Value=4.1e-32)
          Length = 728

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 192 LVGKTALITGCNTGIGKETXLIXTXEVLXL-LWHV 293
           L G+T LITG  +GIG+ T LI   +   L LW +
Sbjct: 33  LRGETVLITGAASGIGRLTALILAKKGCKLVLWDI 67


>SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1268

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +3

Query: 189 KLVGKTALITGCNTGIGK 242
           KL GKT  ITG + GIGK
Sbjct: 2   KLAGKTVFITGASRGIGK 19


>SB_19040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +2

Query: 269 GAXVIMACRSLXRADEAKADIEKS 340
           GA V+MACR + +A +A+  I+K+
Sbjct: 69  GAHVVMACRDMEKAHKAELHIKKT 92


>SB_16518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +2

Query: 269 GAXVIMACRSLXRADEAKADIEKS 340
           GA V+MACR + +A +A+  I+K+
Sbjct: 117 GAHVVMACRDMEKAHKAELHIKKT 140


>SB_34617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 201 KTALITGCNTGIGKETXL 254
           K  LITGC+TG G++T +
Sbjct: 34  KYVLITGCDTGFGRDTAI 51


>SB_20860| Best HMM Match : HTH_10 (HMM E-Value=4.1)
          Length = 110

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 201 KTALITGCNTGIGKETXL 254
           K  LITGC+TG G++T +
Sbjct: 34  KYVLITGCDTGFGRDTAI 51


>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
          Length = 960

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 284 MACRSLXRADEAKADIEKSCNNI 352
           M C S  R D +K D++K C+++
Sbjct: 733 MMCASSCRCDPSKTDVKKPCDHV 755


>SB_21622| Best HMM Match : adh_short (HMM E-Value=3.1e-05)
          Length = 493

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 201 KTALITGCNTGIGKET 248
           ++ +ITG N+GIGKET
Sbjct: 44  RSFMITGANSGIGKET 59


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 28   DILDKFNLSFTQQPRQRESVVSLLHSS 108
            D++D  + S  Q   +RE + SLLH+S
Sbjct: 4739 DVIDGLSASIRQLELEREQMTSLLHAS 4765


>SB_35940| Best HMM Match : adh_short (HMM E-Value=0.00021)
          Length = 181

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 201 KTALITGCNTGIGKET 248
           ++ +ITG N+GIGKET
Sbjct: 44  RSFMITGANSGIGKET 59


>SB_26063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +3

Query: 180 STVKLVGKTA--LITGCNTGIGKETXLI 257
           ST+ L+   A  LITGC+TGIG    L+
Sbjct: 188 STLNLLRSVAIVLITGCSTGIGLAAALL 215


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,205,171
Number of Sequences: 59808
Number of extensions: 142622
Number of successful extensions: 289
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)