Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0848
         (418 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ426886-1|ABD90542.1|  171|Homo sapiens retinol dehydrogenase 1...    43   5e-04
CR457180-1|CAG33461.1|  318|Homo sapiens RDH11 protein.                43   5e-04
BC037302-1|AAH37302.1|  318|Homo sapiens retinol dehydrogenase 1...    43   5e-04
BC026274-1|AAH26274.1|  318|Homo sapiens retinol dehydrogenase 1...    43   5e-04
BC011727-1|AAH11727.1|  318|Homo sapiens RDH11 protein protein.        43   5e-04
BC000112-1|AAH00112.1|  318|Homo sapiens retinol dehydrogenase 1...    43   5e-04
AF395068-1|AAK72049.1|  318|Homo sapiens HCV core-binding protei...    43   5e-04
AF167438-1|AAF89632.1|  318|Homo sapiens androgen-regulated shor...    43   5e-04
AF151840-1|AAD34077.1|  318|Homo sapiens CGI-82 protein protein.       43   5e-04
AY358473-1|AAQ88837.1|  331|Homo sapiens RDH13 protein.                40   0.004
AK075392-1|BAC11591.1|  331|Homo sapiens protein ( Homo sapiens ...    40   0.004
BC025724-1|AAH25724.1|  316|Homo sapiens retinol dehydrogenase 1...    39   0.006
AK054835-1|BAB70811.1|  316|Homo sapiens (ARSDR1) mRNA.  protein.      39   0.006
BC051291-1|AAH51291.1|  305|Homo sapiens RDH11 protein protein.        33   0.51 
AY358566-1|AAQ88929.1|  377|Homo sapiens EALL419 protein.              31   1.2  
BC015582-1|AAH15582.1|  327|Homo sapiens dehydrogenase/reductase...    29   4.7  
BC009830-1|AAH09830.1|  336|Homo sapiens retinol dehydrogenase 1...    29   6.2  
AY358511-1|AAQ88875.1|  336|Homo sapiens PAN2 protein.                 29   6.2  
AF237952-1|AAG12190.1|  336|Homo sapiens PAN2 protein.                 29   6.2  
AC079148-1|AAX93259.1|  336|Homo sapiens unknown protein.              29   6.2  
BC026024-1|AAH26024.1|  312|Homo sapiens DHRS12 protein protein.       29   8.2  

>DQ426886-1|ABD90542.1|  171|Homo sapiens retinol dehydrogenase 11
           protein.
          Length = 171

 Score = 42.7 bits (96), Expect = 5e-04
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = +3

Query: 159 LFXGRCLSTVKLVGKTALITGCNTGIGKET 248
           L  G C STV+L GK  ++TG NTGIGKET
Sbjct: 28  LSSGVCTSTVQLPGKVVVVTGANTGIGKET 57


>CR457180-1|CAG33461.1|  318|Homo sapiens RDH11 protein.
          Length = 318

 Score = 42.7 bits (96), Expect = 5e-04
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = +3

Query: 159 LFXGRCLSTVKLVGKTALITGCNTGIGKET 248
           L  G C STV+L GK  ++TG NTGIGKET
Sbjct: 28  LSSGVCTSTVQLPGKVVVVTGANTGIGKET 57


>BC037302-1|AAH37302.1|  318|Homo sapiens retinol dehydrogenase 11
           (all-trans/9-cis/11-cis) protein.
          Length = 318

 Score = 42.7 bits (96), Expect = 5e-04
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = +3

Query: 159 LFXGRCLSTVKLVGKTALITGCNTGIGKET 248
           L  G C STV+L GK  ++TG NTGIGKET
Sbjct: 28  LSSGVCTSTVQLPGKVVVVTGANTGIGKET 57


>BC026274-1|AAH26274.1|  318|Homo sapiens retinol dehydrogenase 11
           (all-trans/9-cis/11-cis) protein.
          Length = 318

 Score = 42.7 bits (96), Expect = 5e-04
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = +3

Query: 159 LFXGRCLSTVKLVGKTALITGCNTGIGKET 248
           L  G C STV+L GK  ++TG NTGIGKET
Sbjct: 28  LSSGVCTSTVQLPGKVVVVTGANTGIGKET 57


>BC011727-1|AAH11727.1|  318|Homo sapiens RDH11 protein protein.
          Length = 318

 Score = 42.7 bits (96), Expect = 5e-04
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = +3

Query: 159 LFXGRCLSTVKLVGKTALITGCNTGIGKET 248
           L  G C STV+L GK  ++TG NTGIGKET
Sbjct: 28  LSSGVCTSTVQLPGKVVVVTGANTGIGKET 57


>BC000112-1|AAH00112.1|  318|Homo sapiens retinol dehydrogenase 11
           (all-trans/9-cis/11-cis) protein.
          Length = 318

 Score = 42.7 bits (96), Expect = 5e-04
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = +3

Query: 159 LFXGRCLSTVKLVGKTALITGCNTGIGKET 248
           L  G C STV+L GK  ++TG NTGIGKET
Sbjct: 28  LSSGVCTSTVQLPGKVVVVTGANTGIGKET 57


>AF395068-1|AAK72049.1|  318|Homo sapiens HCV core-binding protein
           HCBP12 protein.
          Length = 318

 Score = 42.7 bits (96), Expect = 5e-04
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = +3

Query: 159 LFXGRCLSTVKLVGKTALITGCNTGIGKET 248
           L  G C STV+L GK  ++TG NTGIGKET
Sbjct: 28  LSSGVCTSTVQLPGKVVVVTGANTGIGKET 57


>AF167438-1|AAF89632.1|  318|Homo sapiens androgen-regulated
           short-chain dehydrogenase/reductase 1 protein.
          Length = 318

 Score = 42.7 bits (96), Expect = 5e-04
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = +3

Query: 159 LFXGRCLSTVKLVGKTALITGCNTGIGKET 248
           L  G C STV+L GK  ++TG NTGIGKET
Sbjct: 28  LSSGVCTSTVQLPGKVVVVTGANTGIGKET 57


>AF151840-1|AAD34077.1|  318|Homo sapiens CGI-82 protein protein.
          Length = 318

 Score = 42.7 bits (96), Expect = 5e-04
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = +3

Query: 159 LFXGRCLSTVKLVGKTALITGCNTGIGKET 248
           L  G C STV+L GK  ++TG NTGIGKET
Sbjct: 28  LSSGVCTSTVQLPGKVVVVTGANTGIGKET 57


>AY358473-1|AAQ88837.1|  331|Homo sapiens RDH13 protein.
          Length = 331

 Score = 39.5 bits (88), Expect = 0.004
 Identities = 18/37 (48%), Positives = 23/37 (62%)
 Frame = +3

Query: 144 LFKMPLFXGRCLSTVKLVGKTALITGCNTGIGKETXL 254
           L K  +  G C S   + GKT ++TG NTGIGK+T L
Sbjct: 20  LLKDYVTGGACPSKATIPGKTVIVTGANTGIGKQTAL 56


>AK075392-1|BAC11591.1|  331|Homo sapiens protein ( Homo sapiens
           cDNA PSEC0082 fis, clone NT2RP2004966, highly similar to
           Retinol dehydrogenase 13 (EC 1.1.1.-). ).
          Length = 331

 Score = 39.5 bits (88), Expect = 0.004
 Identities = 18/37 (48%), Positives = 23/37 (62%)
 Frame = +3

Query: 144 LFKMPLFXGRCLSTVKLVGKTALITGCNTGIGKETXL 254
           L K  +  G C S   + GKT ++TG NTGIGK+T L
Sbjct: 20  LLKDYVTGGACPSKATIPGKTVIVTGANTGIGKQTAL 56


>BC025724-1|AAH25724.1|  316|Homo sapiens retinol dehydrogenase 12
           (all-trans/9-cis/11-cis) protein.
          Length = 316

 Score = 39.1 bits (87), Expect = 0.006
 Identities = 17/27 (62%), Positives = 20/27 (74%)
 Frame = +3

Query: 168 GRCLSTVKLVGKTALITGCNTGIGKET 248
           G C + V+L GK  +ITG NTGIGKET
Sbjct: 29  GVCRTNVQLPGKVVVITGANTGIGKET 55


>AK054835-1|BAB70811.1|  316|Homo sapiens (ARSDR1) mRNA.  protein.
          Length = 316

 Score = 39.1 bits (87), Expect = 0.006
 Identities = 17/27 (62%), Positives = 20/27 (74%)
 Frame = +3

Query: 168 GRCLSTVKLVGKTALITGCNTGIGKET 248
           G C + V+L GK  +ITG NTGIGKET
Sbjct: 29  GVCRTNVQLPGKVVVITGANTGIGKET 55


>BC051291-1|AAH51291.1|  305|Homo sapiens RDH11 protein protein.
          Length = 305

 Score = 32.7 bits (71), Expect = 0.51
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +3

Query: 159 LFXGRCLSTVKLVGKTALITGCNTG 233
           L  G C STV+L GK  ++TG NTG
Sbjct: 28  LSSGVCTSTVQLPGKVVVVTGANTG 52


>AY358566-1|AAQ88929.1|  377|Homo sapiens EALL419 protein.
          Length = 377

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 174 CLSTVKLVGKTALITGCNTGIGKETXL 254
           C     L G+TA++TG N+GIGK T L
Sbjct: 28  CGGMGNLRGRTAVVTGANSGIGKMTAL 54



 Score = 29.5 bits (63), Expect = 4.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 266 RGAXVIMACRSLXRADEAKADIEKSCNN 349
           RGA V++ACRS  R + A  D+ +   N
Sbjct: 59  RGARVVLACRSQERGEAAAFDLRQESGN 86


>BC015582-1|AAH15582.1|  327|Homo sapiens dehydrogenase/reductase
           (SDR family) member 13 protein.
          Length = 327

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 266 RGAXVIMACRSLXRADEAKADIEKSCNN 349
           RGA V++ACRS  R + A  D+ +   N
Sbjct: 9   RGARVVLACRSQERGEAAAFDLRQESGN 36


>BC009830-1|AAH09830.1|  336|Homo sapiens retinol dehydrogenase 14
           (all-trans/9-cis/11-cis) protein.
          Length = 336

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 198 GKTALITGCNTGIGKET 248
           GKT LITG N+G+G+ T
Sbjct: 43  GKTVLITGANSGLGRAT 59



 Score = 29.1 bits (62), Expect = 6.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 269 GAXVIMACRSLXRADEAKADIEKSCNNINETG 364
           GA VIM CR   RA+EA   + +      E G
Sbjct: 67  GARVIMGCRDRARAEEAAGQLRRELRQAAECG 98


>AY358511-1|AAQ88875.1|  336|Homo sapiens PAN2 protein.
          Length = 336

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 198 GKTALITGCNTGIGKET 248
           GKT LITG N+G+G+ T
Sbjct: 43  GKTVLITGANSGLGRAT 59



 Score = 29.1 bits (62), Expect = 6.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 269 GAXVIMACRSLXRADEAKADIEKSCNNINETG 364
           GA VIM CR   RA+EA   + +      E G
Sbjct: 67  GARVIMGCRDRARAEEAAGQLRRELRQAAECG 98


>AF237952-1|AAG12190.1|  336|Homo sapiens PAN2 protein.
          Length = 336

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 198 GKTALITGCNTGIGKET 248
           GKT LITG N+G+G+ T
Sbjct: 43  GKTVLITGANSGLGRAT 59



 Score = 29.1 bits (62), Expect = 6.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 269 GAXVIMACRSLXRADEAKADIEKSCNNINETG 364
           GA VIM CR   RA+EA   + +      E G
Sbjct: 67  GARVIMGCRDRARAEEAAGQLRRELRQAAECG 98


>AC079148-1|AAX93259.1|  336|Homo sapiens unknown protein.
          Length = 336

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 198 GKTALITGCNTGIGKET 248
           GKT LITG N+G+G+ T
Sbjct: 43  GKTVLITGANSGLGRAT 59



 Score = 29.1 bits (62), Expect = 6.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 269 GAXVIMACRSLXRADEAKADIEKSCNNINETG 364
           GA VIM CR   RA+EA   + +      E G
Sbjct: 67  GARVIMGCRDRARAEEAAGQLRRELRQAAECG 98


>BC026024-1|AAH26024.1|  312|Homo sapiens DHRS12 protein protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 186 VKLVGKTALITGCNTGIGKETXL 254
           V++ G+  L+TG N+GIGK T L
Sbjct: 31  VQIPGRVFLVTGGNSGIGKATAL 53


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,535,611
Number of Sequences: 237096
Number of extensions: 654268
Number of successful extensions: 978
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3144905170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)