Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0848
         (418 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28739-13|AAK68187.1|  418|Caenorhabditis elegans Dehydrogenases...    33   0.083
Z54269-2|CAA91019.1|  278|Caenorhabditis elegans Hypothetical pr...    29   1.0  
U41277-4|AAA82475.1|  277|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z81457-3|CAB03815.1|  279|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U28943-10|AAA68362.1|  329|Caenorhabditis elegans Dehydrogenases...    28   2.4  
AC006677-6|AAF39953.1|  279|Caenorhabditis elegans Dehydrogenase...    28   2.4  
Z74029-1|CAA98431.1|  293|Caenorhabditis elegans Hypothetical pr...    28   3.1  
Z66500-3|CAA91310.1|  309|Caenorhabditis elegans Hypothetical pr...    28   3.1  
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    27   4.1  
U28943-11|AAK68295.1|  319|Caenorhabditis elegans Hypothetical p...    27   4.1  
U20864-12|AAK68358.2|  257|Caenorhabditis elegans Hypothetical p...    27   4.1  
AC006629-7|ABF71723.1|  402|Caenorhabditis elegans Hypothetical ...    27   4.1  
Z79756-2|CAB02118.1|  313|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AL117207-18|CAB60405.3|  384|Caenorhabditis elegans Hypothetical...    27   7.2  
AF022978-8|AAG24176.1|  279|Caenorhabditis elegans Hypothetical ...    27   7.2  
AF016440-7|AAB65901.2|  317|Caenorhabditis elegans Dehydrogenase...    27   7.2  
Z83236-5|CAB05784.1|  315|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z74032-1|CAA98465.3|  342|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AF016440-8|ABD94107.1|  286|Caenorhabditis elegans Dehydrogenase...    26   9.5  
AC006677-8|AAF39943.1|  278|Caenorhabditis elegans Dehydrogenase...    26   9.5  
AC006677-5|AAF39950.1|  280|Caenorhabditis elegans Hypothetical ...    26   9.5  

>U28739-13|AAK68187.1|  418|Caenorhabditis elegans Dehydrogenases,
           short chain protein6 protein.
          Length = 418

 Score = 33.1 bits (72), Expect = 0.083
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = +3

Query: 180 STVKLVGKTALITGCNTGIGKETXL 254
           +T K VG+T LITG + GIGKE  L
Sbjct: 3   NTGKFVGRTVLITGASRGIGKEIAL 27


>Z54269-2|CAA91019.1|  278|Caenorhabditis elegans Hypothetical
           protein F02C12.2 protein.
          Length = 278

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 201 KTALITGCNTGIGKETXLIXTXE 269
           K A+ITG ++GIG+ET L+   E
Sbjct: 8   KVAIITGSSSGIGRETALLFAKE 30


>U41277-4|AAA82475.1|  277|Caenorhabditis elegans Hypothetical
           protein C06E4.3 protein.
          Length = 277

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 183 TVKLVGKTALITGCNTGIGKETXLIXTXE 269
           T +  GK A+ITG + GIG+ T L+   E
Sbjct: 2   TGRFSGKVAIITGSSFGIGRATALLFAKE 30


>Z81457-3|CAB03815.1|  279|Caenorhabditis elegans Hypothetical
           protein C01G12.5 protein.
          Length = 279

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 198 GKTALITGCNTGIGKETXLIXTXE 269
           GK AL+TG + GIG+ T ++   E
Sbjct: 6   GKVALVTGSSNGIGRATAILLARE 29


>U28943-10|AAA68362.1|  329|Caenorhabditis elegans Dehydrogenases,
           short chain protein7 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 186 VKLVGKTALITGCNTGIGKET 248
           V L GKT ++TG  +GIG ET
Sbjct: 24  VNLAGKTFVVTGTTSGIGIET 44


>AC006677-6|AAF39953.1|  279|Caenorhabditis elegans Dehydrogenases,
           short chain protein14 protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 198 GKTALITGCNTGIGKETXLIXTXE 269
           GK AL+TG + GIG+ T ++   E
Sbjct: 6   GKVALVTGSSNGIGRATAVLLAQE 29


>Z74029-1|CAA98431.1|  293|Caenorhabditis elegans Hypothetical
           protein C45B11.3 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +3

Query: 198 GKTALITGCNTGIGKETXL 254
           GKT  ITG + GIGKE  L
Sbjct: 13  GKTVFITGASRGIGKEIAL 31


>Z66500-3|CAA91310.1|  309|Caenorhabditis elegans Hypothetical
           protein T05C12.3 protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 156 PLFXGRCLSTVKLVGKTALITGCNTGIGK 242
           P+     L    L GK AL+TG  TGIGK
Sbjct: 11  PICNSPILRDGALKGKVALVTGGGTGIGK 39


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 186  VKLVGKTALITGCNTGIGK 242
            ++L  +TAL+ GCN G+G+
Sbjct: 2219 IRLTDETALLYGCNQGVGQ 2237


>U28943-11|AAK68295.1|  319|Caenorhabditis elegans Hypothetical
           protein E04F6.15 protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 177 LSTVKLVGKTALITGCNTGIGKET 248
           L  + L GKT  ITG  +GIG ET
Sbjct: 21  LDGIDLSGKTFAITGTTSGIGVET 44


>U20864-12|AAK68358.2|  257|Caenorhabditis elegans Hypothetical
           protein F32A5.8 protein.
          Length = 257

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 177 LSTVKLVGKTALITGCNTGIGKET 248
           L  + L GKT  ITG  +GIG ET
Sbjct: 29  LKEIDLSGKTYAITGTTSGIGIET 52


>AC006629-7|ABF71723.1|  402|Caenorhabditis elegans Hypothetical
           protein F12E12.11 protein.
          Length = 402

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 180 STVKLVGKTALITGCNTGIGKETXLI 257
           S  +  GK AL+TG + GIG+   L+
Sbjct: 122 SMARFSGKVALVTGSSNGIGRAAALL 147


>Z79756-2|CAB02118.1|  313|Caenorhabditis elegans Hypothetical
           protein F53C11.3 protein.
          Length = 313

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 156 PLFXGRCLSTVKLVGKTALITGCNTGIGK 242
           P+     L    L GK AL+TG  TG+GK
Sbjct: 12  PVVKSVALPPGSLNGKVALVTGGGTGLGK 40


>AL117207-18|CAB60405.3|  384|Caenorhabditis elegans Hypothetical
           protein Y60A3A.10 protein.
          Length = 384

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 192 LVGKTALITGCNTGIGKET 248
           L GKT ++TG  +GIG+ T
Sbjct: 46  LAGKTYIVTGATSGIGQAT 64


>AF022978-8|AAG24176.1|  279|Caenorhabditis elegans Hypothetical
           protein T01G6.1 protein.
          Length = 279

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 189 KLVGKTALITGCNTGIGKETXLI 257
           +  GK+ +ITG ++GIG+ T ++
Sbjct: 3   RFAGKSVIITGSSSGIGRATAVL 25


>AF016440-7|AAB65901.2|  317|Caenorhabditis elegans Dehydrogenases,
           short chain protein17, isoform a protein.
          Length = 317

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +3

Query: 144 LFKMPLFXGRCLSTVKLVG--KTALITGCNTGIGKETXL 254
           + K+    GR    +  +   +T LITG   GIGK+T L
Sbjct: 18  ILKLQNLIGRTCQIMTTINYKRTILITGATDGIGKQTAL 56


>Z83236-5|CAB05784.1|  315|Caenorhabditis elegans Hypothetical
           protein K10H10.6 protein.
          Length = 315

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 147 FKMPLFXGRCLSTVKLVGKTALITGCNTGIGKET 248
           F    +    L  + + GKT  ITG  +GIG +T
Sbjct: 10  FHSRTYADEVLKGIDVAGKTYAITGTTSGIGVDT 43


>Z74032-1|CAA98465.3|  342|Caenorhabditis elegans Hypothetical
           protein F35B12.2 protein.
          Length = 342

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 192 LVGKTALITGCNTGIGKE 245
           L  +  LITGC+TG G+E
Sbjct: 39  LQDRAILITGCDTGFGRE 56


>AF016440-8|ABD94107.1|  286|Caenorhabditis elegans Dehydrogenases,
           short chain protein17, isoform b protein.
          Length = 286

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 201 KTALITGCNTGIGKETXL 254
           +T LITG   GIGK+T L
Sbjct: 8   RTILITGATDGIGKQTAL 25


>AC006677-8|AAF39943.1|  278|Caenorhabditis elegans Dehydrogenases,
           short chain protein15 protein.
          Length = 278

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 201 KTALITGCNTGIGKETXLIXTXE 269
           K A+ITG ++GIG+ T ++   E
Sbjct: 7   KVAIITGSSSGIGRSTAVLLAQE 29


>AC006677-5|AAF39950.1|  280|Caenorhabditis elegans Hypothetical
           protein R05D8.7 protein.
          Length = 280

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 201 KTALITGCNTGIGKETXLIXTXE 269
           KT +ITG + GIG+ T ++   E
Sbjct: 7   KTVIITGSSNGIGRTTAILFAQE 29


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,536,676
Number of Sequences: 27780
Number of extensions: 109375
Number of successful extensions: 262
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)