Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0848
         (418 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    25   0.26 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   5.6  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    20   9.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   9.7  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 25.4 bits (53), Expect = 0.26
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 195 VGKTALITGCNTGIGK 242
           + + AL+TG N+GIGK
Sbjct: 6   IDEVALVTGANSGIGK 21


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 225 NTGIGKETXLIXTXEVLXLLW 287
           N+GIG+ T    +  VL ++W
Sbjct: 623 NSGIGEGTPRSFSARVLGMVW 643


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 10  RGCLELDILDKFNLSFTQQPRQR 78
           + C  +D +DK NLS T   ++R
Sbjct: 114 QACGFIDNIDKRNLSVTSMIQKR 136


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +3

Query: 156 PLFXGRCLSTVKLVGKTALI 215
           P F G    T  LVGKT  +
Sbjct: 926 PAFSGTSSPTNSLVGKTVAV 945


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,137
Number of Sequences: 438
Number of extensions: 1270
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)