Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0848
(418 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g50700.1 68418.m06282 short-chain dehydrogenase/reductase (SD... 30 0.72
At5g50690.1 68418.m06281 short-chain dehydrogenase/reductase (SD... 30 0.72
At5g50600.1 68418.m06268 short-chain dehydrogenase/reductase (SD... 30 0.72
At5g50590.1 68418.m06267 short-chain dehydrogenase/reductase (SD... 30 0.72
At4g09750.1 68417.m01601 short-chain dehydrogenase/reductase (SD... 29 0.95
At3g26770.1 68416.m03348 short-chain dehydrogenase/reductase (SD... 29 0.95
At4g03140.1 68417.m00427 short-chain dehydrogenase/reductase (SD... 29 1.3
At3g47350.1 68416.m05148 short-chain dehydrogenase/reductase (SD... 29 1.7
At3g26760.1 68416.m03347 short-chain dehydrogenase/reductase (SD... 29 1.7
At1g52340.1 68414.m05908 short-chain dehydrogenase/reductase (SD... 28 2.2
At3g05260.1 68416.m00574 short-chain dehydrogenase/reductase (SD... 28 2.9
At4g13180.1 68417.m02050 short-chain dehydrogenase/reductase (SD... 27 3.8
At4g11410.1 68417.m01839 short-chain dehydrogenase/reductase (SD... 27 3.8
At2g47130.1 68415.m05886 short-chain dehydrogenase/reductase (SD... 27 3.8
At3g51680.1 68416.m05667 short-chain dehydrogenase/reductase (SD... 27 5.1
At2g17845.1 68415.m02067 short-chain dehydrogenase/reductase (SD... 27 5.1
At1g54870.1 68414.m06265 short-chain dehydrogenase/reductase (SD... 27 5.1
At5g06060.1 68418.m00671 tropinone reductase, putative / tropine... 27 6.7
At4g23430.2 68417.m03378 short-chain dehydrogenase/reductase (SD... 26 8.9
At4g23430.1 68417.m03377 short-chain dehydrogenase/reductase (SD... 26 8.9
At4g23420.2 68417.m03376 short-chain dehydrogenase/reductase (SD... 26 8.9
At4g23420.1 68417.m03375 short-chain dehydrogenase/reductase (SD... 26 8.9
>At5g50700.1 68418.m06282 short-chain dehydrogenase/reductase (SDR)
family protein contains oxidoreductase, short chain
dehydrogenase/reductase family domain, Pfam:PF00106
Length = 349
Score = 29.9 bits (64), Expect = 0.72
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 138 FYLFKMPLFXGRCLSTVKLVGKTALITGCNTGIGKE 245
FY FK + + L GK LITG ++GIG++
Sbjct: 27 FYFFKFLQSIFSTIFSENLYGKVVLITGASSGIGEQ 62
>At5g50690.1 68418.m06281 short-chain dehydrogenase/reductase (SDR)
family protein similar to steroleosin [Sesamum indicum]
GI:15824408; contains Pfam profile PF00106:
oxidoreductase, short chain dehydrogenase/reductase
family
Length = 299
Score = 29.9 bits (64), Expect = 0.72
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 147 FKMPLFXGRCLSTVKLVGKTALITGCNTGIGK 242
FK+ F C + K+ GK +ITG ++GIG+
Sbjct: 30 FKLLQFIRGCKESEKVNGKVVIITGSSSGIGE 61
>At5g50600.1 68418.m06268 short-chain dehydrogenase/reductase (SDR)
family protein similar to sterol-binding dehydrogenase
steroleosin GI:15824408 from [Sesamum indicum]
Length = 349
Score = 29.9 bits (64), Expect = 0.72
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 138 FYLFKMPLFXGRCLSTVKLVGKTALITGCNTGIGKE 245
FY FK + + L GK LITG ++GIG++
Sbjct: 27 FYFFKFLQSIFSTIFSENLYGKVVLITGASSGIGEQ 62
>At5g50590.1 68418.m06267 short-chain dehydrogenase/reductase (SDR)
family protein similar to sterol-binding dehydrogenase
steroleosin GI:15824408 from [Sesamum indicum]
Length = 299
Score = 29.9 bits (64), Expect = 0.72
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 147 FKMPLFXGRCLSTVKLVGKTALITGCNTGIGK 242
FK+ F C + K+ GK +ITG ++GIG+
Sbjct: 30 FKLLQFIRGCKESEKVNGKVVIITGSSSGIGE 61
>At4g09750.1 68417.m01601 short-chain dehydrogenase/reductase (SDR)
family protein similar to androgen-regulated short-chain
dehydrogenase/reductase 1 GI:9622124 from [Homo sapiens]
Length = 322
Score = 29.5 bits (63), Expect = 0.95
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 266 RGAXVIMACRSLXRADEAKADIEKSCNNIN 355
RGA V M CR+ R EA + I+ S N N
Sbjct: 66 RGATVYMVCRNKERGQEALSKIQTSTGNQN 95
>At3g26770.1 68416.m03348 short-chain dehydrogenase/reductase (SDR)
family protein similar to sex determination protein
tasselseed 2 SP:P50160 from [Zea mays]
Length = 306
Score = 29.5 bits (63), Expect = 0.95
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 168 GRCLSTVK-LVGKTALITGCNTGIGKET 248
G C T K L GK ALITG +G+GK T
Sbjct: 32 GGCTCTSKKLEGKVALITGGASGLGKAT 59
>At4g03140.1 68417.m00427 short-chain dehydrogenase/reductase (SDR)
family protein similar to stem secoisolariciresinol
dehydrogenase GI:13752458 from {Forsythia x intermedia};
similar to sex determination protein tasselseed 2
SP:P50160 from [Zea mays]
Length = 279
Score = 29.1 bits (62), Expect = 1.3
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +3
Query: 189 KLVGKTALITGCNTGIGKET 248
KL GK ALITG +GIGK T
Sbjct: 13 KLEGKVALITGGASGIGKAT 32
>At3g47350.1 68416.m05148 short-chain dehydrogenase/reductase (SDR)
family protein similar to sterol-binding dehydrogenase
steroleosin GI:15824408 from [Sesamum indicum]
Length = 308
Score = 28.7 bits (61), Expect = 1.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 138 FYLFKMPLFXGRCLSTVKLVGKTALITGCNTGIGK 242
FYLF + + L + GK LITG ++GIG+
Sbjct: 26 FYLFTKLMSCLKHLHFENVTGKVVLITGASSGIGE 60
>At3g26760.1 68416.m03347 short-chain dehydrogenase/reductase (SDR)
family protein similar to sex determination protein
tasselseed 2 SP:P50160 from [Zea mays]
Length = 300
Score = 28.7 bits (61), Expect = 1.7
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +3
Query: 180 STVKLVGKTALITGCNTGIGKET 248
S+ KL GK A+ITG +GIGK T
Sbjct: 32 SSRKLEGKVAVITGGASGIGKAT 54
>At1g52340.1 68414.m05908 short-chain dehydrogenase/reductase (SDR)
family protein similar to stem secoisolariciresinol
dehydrogenase GI:13752458 from [Forsythia x intermedia]
Length = 285
Score = 28.3 bits (60), Expect = 2.2
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3
Query: 177 LSTVKLVGKTALITGCNTGIGK 242
L + +L+GK ALITG TGIG+
Sbjct: 13 LPSQRLLGKVALITGGATGIGE 34
>At3g05260.1 68416.m00574 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
short-chain dehydrogenase/reductase (SDR) superfamily
Length = 289
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +3
Query: 189 KLVGKTALITGCNTGIGK 242
KL GK AL+TG ++GIGK
Sbjct: 36 KLHGKVALVTGGDSGIGK 53
>At4g13180.1 68417.m02050 short-chain dehydrogenase/reductase (SDR)
family protein similar to short-chain type
dehydrogenase/reductase SP:Q08632 [Picea abies]
Length = 263
Score = 27.5 bits (58), Expect = 3.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 171 RCLSTVKLVGKTALITGCNTGIGKE 245
R S++ L G+ A++TG G+G+E
Sbjct: 6 RSSSSLPLAGRVAIVTGATRGMGRE 30
>At4g11410.1 68417.m01839 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
Short-chain dehydrogenase/reductase (SDR) superfamily
Length = 317
Score = 27.5 bits (58), Expect = 3.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 198 GKTALITGCNTGIGKET 248
G TA++TG ++GIG+ET
Sbjct: 29 GLTAIVTGASSGIGEET 45
>At2g47130.1 68415.m05886 short-chain dehydrogenase/reductase (SDR)
family protein similar to
3-beta-hydroxysteroiddehydrogenase GI:15983819 from
[Digitalis lanata]
Length = 257
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 177 LSTVKLVGKTALITGCNTGIGKETXLIXT 263
+S ++L GK A+ITG +GIG E + T
Sbjct: 1 MSGLRLDGKIAIITGGASGIGAEAVRLFT 29
>At3g51680.1 68416.m05667 short-chain dehydrogenase/reductase (SDR)
family protein similar to short-chain alcohol
dehydrogenase GI:1877480 from [Tripsacum dactyloides]
Length = 303
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 189 KLVGKTALITGCNTGIGKETXLI 257
+L GK A+ITG GIGK T ++
Sbjct: 31 RLEGKVAIITGGAHGIGKATVML 53
>At2g17845.1 68415.m02067 short-chain dehydrogenase/reductase (SDR)
family protein contains similarity to
3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
from [Bacillus subtilis]
Length = 312
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 183 TVKLVGKTALITGCNTGIGKETXL 254
T +L K L+TG ++GIG+E L
Sbjct: 44 TCELKDKVVLVTGASSGIGREVCL 67
>At1g54870.1 68414.m06265 short-chain dehydrogenase/reductase (SDR)
family protein C-terminal similar to dormancy related
protein GI:1220178 from [Trollius ledebourii]
Length = 288
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +3
Query: 189 KLVGKTALITGCNTGIGK 242
KL GK ALITG ++GIG+
Sbjct: 34 KLRGKVALITGGDSGIGR 51
>At5g06060.1 68418.m00671 tropinone reductase, putative / tropine
dehydrogenase, putative similar to tropinone reductase
SP:P50165 from [Datura stramonium]
Length = 264
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 192 LVGKTALITGCNTGIGK 242
L GKTAL+TG GIG+
Sbjct: 9 LAGKTALVTGGTRGIGR 25
>At4g23430.2 68417.m03378 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
Short-chain dehydrogenase/reductase (SDR) superfamily;
contains Pfam PF00106: oxidoreductase, short chain
dehydrogenase/reductase family
Length = 322
Score = 26.2 bits (55), Expect = 8.9
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 198 GKTALITGCNTGIGKET 248
G TA++TG ++GIG ET
Sbjct: 29 GLTAIVTGASSGIGVET 45
>At4g23430.1 68417.m03377 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
Short-chain dehydrogenase/reductase (SDR) superfamily;
contains Pfam PF00106: oxidoreductase, short chain
dehydrogenase/reductase family
Length = 320
Score = 26.2 bits (55), Expect = 8.9
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 198 GKTALITGCNTGIGKET 248
G TA++TG ++GIG ET
Sbjct: 29 GLTAIVTGASSGIGVET 45
>At4g23420.2 68417.m03376 short-chain dehydrogenase/reductase (SDR)
family protein similar to WW-domain oxidoreductase [Mus
musculus] GI:6934274, WW domain-containing
oxidoreductase isoform FORII [Homo sapiens] GI:15667686;
contains Pfam PF00106: oxidoreductase, short chain
dehydrogenase/reductase family
Length = 316
Score = 26.2 bits (55), Expect = 8.9
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 198 GKTALITGCNTGIGKET 248
G TA++TG ++GIG ET
Sbjct: 29 GLTAIVTGASSGIGVET 45
>At4g23420.1 68417.m03375 short-chain dehydrogenase/reductase (SDR)
family protein similar to WW-domain oxidoreductase [Mus
musculus] GI:6934274, WW domain-containing
oxidoreductase isoform FORII [Homo sapiens] GI:15667686;
contains Pfam PF00106: oxidoreductase, short chain
dehydrogenase/reductase family
Length = 316
Score = 26.2 bits (55), Expect = 8.9
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 198 GKTALITGCNTGIGKET 248
G TA++TG ++GIG ET
Sbjct: 29 GLTAIVTGASSGIGVET 45
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,030,791
Number of Sequences: 28952
Number of extensions: 99332
Number of successful extensions: 232
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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