Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0847
         (598 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4Y3H6 Cluster: Putative uncharacterized protein; n=4; ...    35   1.3  
UniRef50_UPI00006CB83F Cluster: hypothetical protein TTHERM_0058...    33   3.9  
UniRef50_UPI000049A4C7 Cluster: hypothetical protein 2.t00097; n...    32   8.9  
UniRef50_A0DPI6 Cluster: Chromosome undetermined scaffold_59, wh...    32   8.9  

>UniRef50_Q4Y3H6 Cluster: Putative uncharacterized protein; n=4;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 791

 Score = 35.1 bits (77), Expect = 1.3
 Identities = 19/49 (38%), Positives = 29/49 (59%)
 Frame = +1

Query: 73  ELQNINRNIQLNRSFNSIDVHTIIINKEGIERKLSLNL*LIITKCT*IK 219
           EL N+NR +++N +F+ I  H  +  KEG+   LS ++  I  KC  IK
Sbjct: 564 ELNNLNRFLKINYNFSKIP-HIYLNKKEGVINPLSTDVIAINLKCNIIK 611


>UniRef50_UPI00006CB83F Cluster: hypothetical protein
           TTHERM_00580430; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00580430 - Tetrahymena
           thermophila SB210
          Length = 922

 Score = 33.5 bits (73), Expect = 3.9
 Identities = 13/25 (52%), Positives = 20/25 (80%)
 Frame = +1

Query: 82  NINRNIQLNRSFNSIDVHTIIINKE 156
           NIN+ I LNRSFN++D + I++ K+
Sbjct: 753 NINQGINLNRSFNTVDNNQILMQKQ 777


>UniRef50_UPI000049A4C7 Cluster: hypothetical protein 2.t00097; n=1;
           Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 2.t00097 - Entamoeba histolytica HM-1:IMSS
          Length = 702

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 19/45 (42%), Positives = 26/45 (57%)
 Frame = +2

Query: 449 LYNQIVCSTFKTDICRKKTLFLRNGFILK*FSPNGKLDSFFSYFE 583
           L   I C TFK D   K+T+   N F+LK F P  ++D+FF  F+
Sbjct: 299 LDKNIACKTFKED--GKQTI---NIFVLKTFYPETEVDNFFETFD 338


>UniRef50_A0DPI6 Cluster: Chromosome undetermined scaffold_59, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_59,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 386

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +3

Query: 390 C*HSGSCISGFSRGTIAY--SDCIIKSYVLPSRLIFAEKKRCFYATDSF*SNSARMESWI 563
           C ++G CI+GF    ++Y  SDC I+   + ++L    K+  F+   SF  N ++ E  +
Sbjct: 97  CQNNGKCINGFCECPVSYLGSDCTIQIKDIENQLDLEPKQYYFFHIKSF--NISKFERQL 154

Query: 564 VSF 572
            +F
Sbjct: 155 ETF 157


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 527,845,346
Number of Sequences: 1657284
Number of extensions: 10037831
Number of successful extensions: 19785
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19775
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)