Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0847
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    28   0.90 
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    26   4.8  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   4.8  
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    25   8.4  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = -2

Query: 285  FTNLAASFDLYTRVIQTQEDIVFYLSALCDYKSKIQR*LPLNS 157
            F+N   +FD   R  +    ++ ++ ++C+Y   +++  PLNS
Sbjct: 3287 FSNPIFTFDSVNRASKACGPLLLWIKSICNYSKVLEKLEPLNS 3329


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = -2

Query: 366  DSFPNHSWLQIVHLHFNRSFHSSFIHSFTNLAASFDLYTRVIQTQEDIVFYLSALC 199
            + F +  +LQ + +H+  S  SS  HS+     S D ++  +   + +V  +   C
Sbjct: 1484 NGFASSQYLQSLFIHYLSSLLSSMQHSYETNGHSSDTHSLFVINSQRVVGDILQYC 1539


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +3

Query: 165  EEVIAESLTYNHK----VHLNKIRCLPVFELRACKDQMTLQDW*TN 290
            + +I+E  T N      + ++   CLPVF+       + ++DW TN
Sbjct: 1618 DSLISEEFTINSAGIQLILISDAHCLPVFDFTIENFNVLVKDWSTN 1663


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 7/30 (23%), Positives = 18/30 (60%)
 Frame = -1

Query: 463 DLIIQSLYAMVPRLKPEIQEPLCQQYAFIL 374
           D  +++ YA+   + P +++ +CQ   ++L
Sbjct: 218 DTFLETCYALATDVSPNVRKNVCQALVYLL 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,349,023
Number of Sequences: 5004
Number of extensions: 48016
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)