Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0847
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36688| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_54548| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_16110| Best HMM Match : Rota_NS6 (HMM E-Value=4.3)                  28   5.0  
SB_18660| Best HMM Match : Lum_binding (HMM E-Value=2.1)               28   5.0  
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)             27   8.7  

>SB_36688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
 Frame = -3

Query: 233 RKTSYFI*VHFVIISQRFSDNFLSIPSLFIIIVCTSIELKDRLS*M-LRLMFCSSVEFTK 57
           R++S  +  ++++ S  FSD    + ++ ++I C+S+ + D +  + +R +  S++    
Sbjct: 30  RRSSLRVKANYILASLAFSDCMSGLLAIPLLIACSSMSVYDEVVCVGMRFLAISTILHLT 89

Query: 56  TSQNFSSF-----FRFKSQVTSC 3
           T+     F     FR +S VT C
Sbjct: 90  TALRERYFKIVNSFRHRSVVTKC 112


>SB_54548| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 64  NSTELQNINRNIQLNRSFNSIDVHTIIINKEGIERKLSLNL 186
           N +    + R I LNR  NS+ + T+ +   G   +LS+ L
Sbjct: 174 NHSSQLTLTRTIYLNRLQNSLSISTVSLRLHGTSSRLSIGL 214


>SB_16110| Best HMM Match : Rota_NS6 (HMM E-Value=4.3)
          Length = 216

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +1

Query: 64  NSTELQNINRNIQLNRSFNSI---DVHTIIINKEGIERKLSLNL*LIITKC 207
           N+T + N+ RN+Q+N   N +      +II   + + R+    L L+  KC
Sbjct: 59  NNTVVNNVGRNLQVNLHKNFVINKGTDSIINESDNLPRRSMSGLLLLFVKC 109


>SB_18660| Best HMM Match : Lum_binding (HMM E-Value=2.1)
          Length = 215

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 434 GSAAETRNTRTTMSTIRFYTDR*IASQTTAGY 339
           GS  + R        IR+YTDR +  Q TA +
Sbjct: 10  GSGVDMREEMGNSENIRYYTDRDLGGQDTAAF 41


>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
          Length = 868

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = -1

Query: 508 QRFFSANISLEGRTYDLIIQSLYAMV--PRLKPEIQEP-LCQQYAFILIDR*LPK 353
           +RF+ ++ SL+ RTY    +  Y +V      P ++ P LC+Q+ F ++   LPK
Sbjct: 362 RRFYLSSDSLDPRTYQTTSKVFYLLVLLREEAPLVRPPALCEQFHFDMV---LPK 413


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,373,481
Number of Sequences: 59808
Number of extensions: 315609
Number of successful extensions: 491
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)