Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0847
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006662-5|AAF39894.1|  501|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AC006662-5|AAF39894.1|  501|Caenorhabditis elegans Hypothetical
           protein H23L24.2 protein.
          Length = 501

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +1

Query: 61  VNSTELQNINRNIQ-LNRSFNSIDVHTIIINKEGIERKLSLN 183
           +  T+  NI R++Q ++ S +S+D H +  NK  IE+K++ N
Sbjct: 94  IEMTDDANIKRDLQSISTSRSSVDSHHMAYNKLLIEKKINEN 135


>Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical
           protein T21B6.3 protein.
          Length = 821

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = -2

Query: 369 IDSFPNHSWLQIVHLHFNRSFHSSFIHSFTNLAASFDLYTRVIQTQEDIVFYLSALCD 196
           +D FP  S +   +LH     H  ++ S  ++    DL  +  + ++DIV  L  + D
Sbjct: 67  VDIFPECSAVVYYYLHNETKKHFCYLFSDNSVQDKIDLVEQKPENKKDIVRMLELVVD 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,670,250
Number of Sequences: 27780
Number of extensions: 259333
Number of successful extensions: 485
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)