Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0847
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18810.1 68415.m02189 hypothetical protein contains Pfam prof...    32   0.33 
At2g31720.1 68415.m03871 expressed protein contains Pfam profile...    30   1.0  
At4g29970.1 68417.m04263 F-box family protein contains F-box dom...    29   3.1  

>At2g18810.1 68415.m02189 hypothetical protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313)
          Length = 234

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +1

Query: 58  FVNSTELQNINRNIQ-LNRSFNSIDVHTIIINKEGIERKLSL 180
           F+N  EL+ I+R+ + ++ S    DV  I++N EG++RKL L
Sbjct: 95  FLNEEELEKIDRHYKKISDSDKGADV--ILVNSEGLQRKLKL 134


>At2g31720.1 68415.m03871 expressed protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313)
          Length = 313

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +1

Query: 58  FVNSTELQNINRNIQ-LNRSFNSIDVHTIIINKEGIERKLSL 180
           F+N  EL+ I+R+ + ++ S    DV  I++N +G++RKL L
Sbjct: 177 FLNEEELEKIDRHHKKISASDKGADV--IVVNSKGLQRKLKL 216


>At4g29970.1 68417.m04263 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 283

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +3

Query: 96  HSA*SIF*FN*RTHNYN--K*GRN*EEVIAESLT-YNHKVHLNKIRCLPVFELRACKDQM 266
           H   S+  FN R+  +N  K  ++ + + + +L  YN K+ L    C    +L   KD  
Sbjct: 151 HKLLSLISFNLRSEEFNVIKFPKDVKHIWSSNLVNYNGKIALTSYSCNGTLDLWVMKDDA 210

Query: 267 TLQDW 281
           + Q+W
Sbjct: 211 SKQEW 215


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,570,784
Number of Sequences: 28952
Number of extensions: 224453
Number of successful extensions: 358
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)