Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0839
         (602 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6LQQ8 Cluster: Putative uncharacterized protein; n=1; ...    32   9.1  

>UniRef50_A6LQQ8 Cluster: Putative uncharacterized protein; n=1;
           Clostridium beijerinckii NCIMB 8052|Rep: Putative
           uncharacterized protein - Clostridium beijerinckii NCIMB
           8052
          Length = 158

 Score = 32.3 bits (70), Expect = 9.1
 Identities = 29/130 (22%), Positives = 61/130 (46%), Gaps = 4/130 (3%)
 Frame = -3

Query: 540 NSXSSGCQISYRVVXS--AQHRSCQXRYYQSLSKSHTNNLSVSFFMFLFSIKANFX*YSP 367
           N  +SG + +  ++ S    +     +    L K  T  L+ +  + LF +   +  Y+ 
Sbjct: 27  NHLTSGKKANNAIIGSRYGSNMKSNDKMINVLIKRITKELTGATLLLLFFVGLKYTPYAQ 86

Query: 366 NKQL-IYCYN*MNTHFFNRKFVSE**XCVKSIXSIKLKVCD-GNYVLDLIIELENLRALN 193
            +++ I C   +N +F   +++         I +IK K    GN+ +D  +++ENL+   
Sbjct: 87  VQEMHIKCKQALNRNFNYNEYIDT--FSTMQIGNIKGKDLKIGNFTVD-DLKIENLKLRT 143

Query: 192 QNYVEPVKSN 163
            N++E ++SN
Sbjct: 144 FNFMEYIRSN 153


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 483,398,351
Number of Sequences: 1657284
Number of extensions: 7898520
Number of successful extensions: 13287
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 12978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13286
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42732687689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)