Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0838
(573 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyc... 137 1e-33
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 101 6e-23
SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3 |Schizosac... 73 4e-14
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 32 0.052
SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ... 26 4.5
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 25 6.0
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 25 6.0
>SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 137 bits (331), Expect = 1e-33
Identities = 56/92 (60%), Positives = 78/92 (84%)
Frame = +1
Query: 259 RELITTVLARKPKMCSFLEWKDVKVVYKRYASLYFCCAMEQEDNELLTLELIHRYVELLD 438
R++ + V+ RKPKMC+F+E+K K+VY+RYASL+F C +EQ+DNEL+ LE+IH++VE LD
Sbjct: 34 RDVSSLVITRKPKMCNFVEYKGEKIVYRRYASLFFVCGIEQDDNELIILEVIHKFVECLD 93
Query: 439 KYFGXVCELDIIFNFEKAYFILDDWFLGGXLQ 534
KYFG VCELD+IFNFEKAY+++++ L G LQ
Sbjct: 94 KYFGNVCELDLIFNFEKAYYVMEELLLAGELQ 125
Score = 31.5 bits (68), Expect = 0.091
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +2
Query: 167 MQFMLLFSRQGKLRLQKWY 223
++F LL SRQGK+RL KW+
Sbjct: 3 IKFFLLVSRQGKVRLAKWF 21
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 101 bits (243), Expect = 6e-23
Identities = 43/76 (56%), Positives = 58/76 (76%)
Frame = +1
Query: 304 SFLEWKDVKVVYKRYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGXVCELDIIFNF 483
+FLEW++ K+VY+RYA LYFC ++ DN+L LE+IH +VE+LD +FG VCELD+IFNF
Sbjct: 49 NFLEWENSKLVYRRYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNF 108
Query: 484 EKAYFILDDWFLGGXL 531
K ILD+ LGG +
Sbjct: 109 YKVSAILDEIILGGEI 124
Score = 30.3 bits (65), Expect = 0.21
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 164 MMQFMLLFSRQGKLRLQKWYVAHPD 238
M+QF+L+ +R GK RL K+YV D
Sbjct: 1 MIQFILIQNRHGKNRLSKYYVPFDD 25
>SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 165
Score = 72.5 bits (170), Expect = 4e-14
Identities = 34/92 (36%), Positives = 58/92 (63%), Gaps = 4/92 (4%)
Frame = +1
Query: 262 ELITTVLARKPKMCSFLEWKDV----KVVYKRYASLYFCCAMEQEDNELLTLELIHRYVE 429
++ V R P C+FLE + +++Y++YA+LYF +++ ++EL L+LI +VE
Sbjct: 34 DIYAAVSTRPPTACNFLESNLIAGKNRIIYRQYATLYFVFVVDEGESELGILDLIQVFVE 93
Query: 430 LLDKYFGXVCELDIIFNFEKAYFILDDWFLGG 525
LD+ F VCELD++F F++ + IL + GG
Sbjct: 94 ALDRCFNNVCELDLVFKFQEIHAILAEVVSGG 125
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 32.3 bits (70), Expect = 0.052
Identities = 16/67 (23%), Positives = 31/67 (46%)
Frame = +1
Query: 334 VYKRYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGXVCELDIIFNFEKAYFILDDW 513
+Y ++ LY + N ++ LE + ++ L YFG + E + N + +LD+
Sbjct: 55 IYTKHEDLYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKDNVSFIFELLDEM 114
Query: 514 FLGGXLQ 534
G +Q
Sbjct: 115 IDYGIIQ 121
>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 282
Score = 25.8 bits (54), Expect = 4.5
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 334 VYKRYASLYFCCAMEQEDNELLTLELIHRYVELLDKYF 447
++ R LYF A N +L+ R VE+ ++YF
Sbjct: 175 LFARLGDLYFVLAQSNATNYWFSLKHYCRSVEICEEYF 212
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 6.0
Identities = 16/80 (20%), Positives = 31/80 (38%)
Frame = +1
Query: 310 LEWKDVKVVYKRYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGXVCELDIIFNFEK 489
L + + +Y + +Y + + + L + + ++ YF + E I NF
Sbjct: 50 LTHEGINYIYIHHNDVYLLALSKMNSDAMEMLVFLRKMADVFIDYFKELQEESIRDNFVL 109
Query: 490 AYFILDDWFLGGXLQVNPVK 549
Y +LD+ G Q K
Sbjct: 110 VYELLDEIMDFGFPQTTETK 129
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 25.4 bits (53), Expect = 6.0
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Frame = +1
Query: 373 MEQEDNELLTL---ELIHRYVELLDKY 444
M +ED EL L E IH+Y+++ D +
Sbjct: 361 MSEEDEELWELDPVEFIHKYIDIYDDF 387
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,254,854
Number of Sequences: 5004
Number of extensions: 43452
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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