Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0838
(573 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0198 - 32299480-32299643,32300084-32300126,32300843-323009... 136 2e-32
12_01_0662 + 5601147-5601176,5601419-5601517,5601601-5601651,560... 102 2e-22
10_06_0127 - 11027692-11027826,11027925-11027993,11029925-110300... 99 1e-21
08_02_0565 + 18751383-18751676,18751739-18751825,18752593-18752895 69 4e-12
03_02_0244 + 6750973-6751041,6751216-6751258,6751349-6751410,675... 66 2e-11
01_03_0243 + 14154122-14154190,14154373-14154415,14154491-141545... 59 2e-09
03_06_0413 + 33756151-33756475,33756837-33756945,33757004-337570... 46 3e-05
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604... 31 0.86
05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467... 30 1.1
07_03_1297 + 25587445-25587502,25587646-25587740,25588426-255886... 30 1.5
02_05_1165 + 34630369-34630431,34630771-34630855,34631212-346313... 27 8.0
01_06_1282 + 35972234-35972244,35972451-35972522,35972714-359727... 27 8.0
>03_06_0198 -
32299480-32299643,32300084-32300126,32300843-32300929,
32301063-32301098,32301187-32301295,32301408-32301499,
32302029-32302115,32303887-32304222
Length = 317
Score = 136 bits (328), Expect = 2e-32
Identities = 59/97 (60%), Positives = 75/97 (77%)
Frame = +1
Query: 259 RELITTVLARKPKMCSFLEWKDVKVVYKRYASLYFCCAMEQEDNELLTLELIHRYVELLD 438
REL +L R PK+C+F+EWK KVVY+RYASLYFC ++ EDNEL LE+IH +VE+LD
Sbjct: 144 RELSGLILTRGPKLCNFVEWKGYKVVYRRYASLYFCMCIDAEDNELEVLEIIHHFVEVLD 203
Query: 439 KYFGXVCELDIIFNFEKAYFILDDWFLGGXLQVNPVK 549
+YFG VCELD+IFNF KAY+ILD+ + G LQ + K
Sbjct: 204 RYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKK 240
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2
Query: 167 MQFMLLFSRQGKLRLQKWY 223
+ F+LL SRQGK+RL KWY
Sbjct: 113 INFVLLISRQGKVRLTKWY 131
>12_01_0662 +
5601147-5601176,5601419-5601517,5601601-5601651,
5602822-5602995,5603869-5603928,5604759-5604800
Length = 151
Score = 102 bits (244), Expect = 2e-22
Identities = 46/97 (47%), Positives = 65/97 (67%)
Frame = +1
Query: 244 KEEKTRELITTVLARKPKMCSFLEWKDVKVVYKRYASLYFCCAMEQEDNELLTLELIHRY 423
K + E+ V+ R PK +F+E++ KV+Y+RYA L+F ++ DNEL LE IH +
Sbjct: 37 KHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSMCVDITDNELAYLECIHLF 96
Query: 424 VELLDKYFGXVCELDIIFNFEKAYFILDDWFLGGXLQ 534
VE+LD +F VCELD++FNF K Y ILD++ L G LQ
Sbjct: 97 VEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQ 133
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 161 KMMQFMLLFSRQGKLRLQKWYVAHPD 238
+ ++F+LL +RQGK RL K+YV D
Sbjct: 9 QQIRFILLQNRQGKTRLAKYYVPLED 34
>10_06_0127 -
11027692-11027826,11027925-11027993,11029925-11030011,
11030146-11030286
Length = 143
Score = 99 bits (238), Expect = 1e-21
Identities = 42/90 (46%), Positives = 64/90 (71%)
Frame = +1
Query: 262 ELITTVLARKPKMCSFLEWKDVKVVYKRYASLYFCCAMEQEDNELLTLELIHRYVELLDK 441
E++ LAR CSF+E ++ KVVY+RYASL+F ++ ++NEL LE IH VE +D+
Sbjct: 35 EIVRKCLARTDHQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDR 94
Query: 442 YFGXVCELDIIFNFEKAYFILDDWFLGGXL 531
+FG VCELDI+F+ EK +F+L++ + G +
Sbjct: 95 HFGNVCELDIMFHLEKVHFMLEEMVMNGCI 124
>08_02_0565 + 18751383-18751676,18751739-18751825,18752593-18752895
Length = 227
Score = 68.5 bits (160), Expect = 4e-12
Identities = 33/77 (42%), Positives = 48/77 (62%)
Frame = +1
Query: 277 VLARKPKMCSFLEWKDVKVVYKRYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGXV 456
VL CSF+E ++ KVVY+RYASL+F ++ ++NEL LE IH +VE +D++FG V
Sbjct: 91 VLGSGSVQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLFVETMDRHFGNV 150
Query: 457 CELDIIFNFEKAYFILD 507
+ F+ YF D
Sbjct: 151 ----VFFSNPNNYFSCD 163
Score = 32.3 bits (70), Expect = 0.28
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 457 CELDIIFNFEKAYFILDDWFLGGXL 531
CELDI+F+ EK +F+L++ + G +
Sbjct: 184 CELDIMFHLEKVHFMLEEMVMNGCI 208
>03_02_0244 +
6750973-6751041,6751216-6751258,6751349-6751410,
6751779-6751875,6752380-6752450,6752503-6752586,
6753040-6753294
Length = 226
Score = 66.1 bits (154), Expect = 2e-11
Identities = 29/55 (52%), Positives = 38/55 (69%)
Frame = +1
Query: 328 KVVYKRYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGXVCELDIIFNFEKA 492
K+VYK A+LYF + +NEL L+L+ +VE LD+ F VCELDI+FNF KA
Sbjct: 61 KLVYKHLATLYFVFVFDSSENELAVLDLVQVFVETLDRCFKNVCELDIVFNFNKA 115
>01_03_0243 +
14154122-14154190,14154373-14154415,14154491-14154552,
14155214-14155310,14157663-14157733,14158338-14158694
Length = 232
Score = 59.3 bits (137), Expect = 2e-09
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 9/90 (10%)
Frame = +1
Query: 250 EKTRELITTVL----ARKPKMCSFLEWKDV-----KVVYKRYASLYFCCAMEQEDNELLT 402
EK +EL+ V AR + +F++ + K++YK A+LY + +NEL
Sbjct: 26 EKHQELVRAVFQLLSARPDSVSNFVKVDAIFGPGAKLIYKHLATLYLGFVFDGSENELAV 85
Query: 403 LELIHRYVELLDKYFGXVCELDIIFNFEKA 492
L+L+ +VE LD+ F VCEL I+FNF KA
Sbjct: 86 LDLVQVFVETLDRCFKNVCELHIVFNFNKA 115
>03_06_0413 +
33756151-33756475,33756837-33756945,33757004-33757058,
33757059-33757094,33757196-33757282,33757737-33757808
Length = 227
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = +1
Query: 454 VCELDIIFNFEKAYFILDDWFLGGXLQ 534
VCELD+IFNF KAYFILD+ + G LQ
Sbjct: 164 VCELDLIFNFHKAYFILDEVLIAGELQ 190
>01_06_0412 +
29159918-29160046,29160148-29160297,29160385-29160447,
29160540-29160716,29160796-29160899,29162142-29162249,
29162336-29162432,29162540-29162637,29162718-29162859,
29162941-29163063,29163161-29163259
Length = 429
Score = 30.7 bits (66), Expect = 0.86
Identities = 19/75 (25%), Positives = 33/75 (44%)
Frame = +1
Query: 325 VKVVYKRYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGXVCELDIIFNFEKAYFIL 504
V ++ ++ +++ A Q N L +HR V++ YF + E + NF Y +L
Sbjct: 59 VTYMFIQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYELL 118
Query: 505 DDWFLGGXLQVNPVK 549
D+ G Q K
Sbjct: 119 DEMMDFGYPQYTEAK 133
>05_06_0262 -
26746180-26746278,26746371-26746493,26746584-26746725,
26746824-26746921,26747012-26747108,26747215-26747322,
26747900-26748003,26748170-26748268,26748373-26748435,
26748538-26748687,26748769-26748900
Length = 404
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +1
Query: 325 VKVVYKRYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGXVCELDIIFNFEKAYFIL 504
V ++ ++ +++ A Q N L +HR V++ YF + E + NF Y +L
Sbjct: 60 VSYMFIQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYELL 119
Query: 505 DD 510
D+
Sbjct: 120 DE 121
>07_03_1297 +
25587445-25587502,25587646-25587740,25588426-25588629,
25588843-25588959,25589084-25589212,25589591-25589717,
25590174-25590277,25590369-25590473,25590969-25591190,
25591869-25591967
Length = 419
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +1
Query: 325 VKVVYKRYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGXVCELDIIFNFEKAYFIL 504
V ++ + A L+F + L LEL+ R + Y G + E + NF Y +L
Sbjct: 56 VNYIHVKVAGLFFVVTTMVNVSPSLLLELLQRIARVTKDYLGVLNEDSLRKNFILVYELL 115
Query: 505 DD 510
D+
Sbjct: 116 DE 117
>02_05_1165 +
34630369-34630431,34630771-34630855,34631212-34631332,
34631588-34631831,34631922-34632026,34632110-34632154,
34632243-34632395,34632481-34632762,34632844-34632980,
34633065-34633152
Length = 440
Score = 27.5 bits (58), Expect = 8.0
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = -1
Query: 492 CFLKVKDDVQFTNXAKILVQQFYIAMDQLQGQQLIVFLFHSTAEI**CISFIHNFNIFPF 313
CF++V ++ F+ K+L+ F++A DQL Q I L H E C +F P+
Sbjct: 191 CFMRVMRNIIFSPFYKVLMADFFMA-DQLTSQ--IPLLRH--MEFTACYFMAGSFRTHPY 245
Query: 312 KERT 301
+ T
Sbjct: 246 ETCT 249
>01_06_1282 +
35972234-35972244,35972451-35972522,35972714-35972747,
35973247-35973360,35974833-35975036,35975290-35975449,
35976093-35976240,35976345-35976422,35976854-35976938,
35977142-35977213
Length = 325
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +1
Query: 331 VVYKRYASLYFCCAMEQEDNELLTLELIHRYVELLDKYF-GXVCELDIIFNFEKAYFILD 507
VVYK L+F E+NEL+ ++ + E +D V + N + + LD
Sbjct: 209 VVYKFIQDLHFFVTGGDEENELILASVLQGFSEAIDYLLRNKVHRRAALENLDLIFLCLD 268
Query: 508 DWFLGG 525
+ GG
Sbjct: 269 EVVDGG 274
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,525,671
Number of Sequences: 37544
Number of extensions: 241615
Number of successful extensions: 461
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -