Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0838
         (573 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45476| Best HMM Match : Clat_adaptor_s (HMM E-Value=0)             101   6e-22
SB_46459| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   5e-14
SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)     35   0.054
SB_49367| Best HMM Match : AAA (HMM E-Value=0)                         29   2.7  
SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_29579| Best HMM Match : Glyco_hydro_18 (HMM E-Value=1.4)            27   8.2  

>SB_45476| Best HMM Match : Clat_adaptor_s (HMM E-Value=0)
          Length = 141

 Score =  101 bits (241), Expect = 6e-22
 Identities = 43/97 (44%), Positives = 66/97 (68%)
 Frame = +1

Query: 244 KEEKTRELITTVLARKPKMCSFLEWKDVKVVYKRYASLYFCCAMEQEDNELLTLELIHRY 423
           K++   E+   V  R  K  +F+E+++ K+VY+RYA LYFC  ++  DN L  LE IH +
Sbjct: 27  KQKLIEEVHALVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCFCVDVSDNNLYYLEAIHNF 86

Query: 424 VELLDKYFGXVCELDIIFNFEKAYFILDDWFLGGXLQ 534
           VE+L+++F  VCELD++FNF K Y ++D+ FL G L+
Sbjct: 87  VEVLNEFFHNVCELDLVFNFYKVYSVVDEMFLAGELR 123


>SB_46459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 74.5 bits (175), Expect = 5e-14
 Identities = 39/100 (39%), Positives = 60/100 (60%), Gaps = 6/100 (6%)
 Frame = +1

Query: 244 KEEKTRELITTVLARKPKMCSFLEW------KDVKVVYKRYASLYFCCAMEQEDNELLTL 405
           +++  +E    V  R   +C+FLE        D K+VY+ YA+LYF   ++  ++EL  L
Sbjct: 2   QQQIIKETFHLVSRRDDNVCNFLEGGSLIGGADFKLVYRHYATLYFVFCVDSSESELGIL 61

Query: 406 ELIHRYVELLDKYFGXVCELDIIFNFEKAYFILDDWFLGG 525
           +LI  +VE LDK F  VCELD+IF+ +K + IL +  +GG
Sbjct: 62  DLIQVFVETLDKCFENVCELDLIFHMDKVHHILAEIVMGG 101


>SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)
          Length = 331

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +1

Query: 343 RYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGXVCELDIIFNFEKAYFILDD 510
           R  +++      Q  N  +  E + R V+++  YFG V E  I  NF   Y +LD+
Sbjct: 59  RQGNVWIAAVTRQNVNAAMVFEFLFRTVDIMMSYFGKVTEEGIKNNFVLIYELLDE 114


>SB_49367| Best HMM Match : AAA (HMM E-Value=0)
          Length = 976

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +1

Query: 190 PSRQIEASEVVRGSSR*AKEEKTRELITTVLARKP 294
           P  ++ A+E+V G S    EEK REL T+ +A+ P
Sbjct: 737 PFLKLAATEIVSGVSG-ESEEKVRELFTSAVAQAP 770


>SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 833

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
 Frame = +1

Query: 403 LELIHRYVELLDKY-FGXV--CE--LDIIFNFEKAYFILDDWFLGGXLQVNPVKKECSEK 567
           L+LI RY+ +LD + +G +  CE  L I F++ +    LDD  +G  ++      + S+K
Sbjct: 51  LDLILRYLRVLDAHSYGFIQCCERELRIFFHYSQYKGDLDDLRIGDEVEFGVSCDQRSKK 110

Query: 568 PI 573
           P+
Sbjct: 111 PV 112


>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1378

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/72 (23%), Positives = 33/72 (45%)
 Frame = +1

Query: 295 KMCSFLEWKDVKVVYKRYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGXVCELDII 474
           K  +F+E + V+ VY+    LY      +  N L  LE +  +  ++ +Y   + E +I 
Sbjct: 515 KQHTFVETESVRYVYQPLEKLYMLLITTKHSNILEDLETLRLFSRVIPEYCRAMEESEIG 574

Query: 475 FNFEKAYFILDD 510
            +  +  F  D+
Sbjct: 575 EHAFELIFAFDE 586


>SB_29579| Best HMM Match : Glyco_hydro_18 (HMM E-Value=1.4)
          Length = 367

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -3

Query: 535 LVAXHPRTSHQV*SMLSQS*R*CPVHKXCQNTCPAVLHSDGSTPRSAAHCL 383
           +   HPR  H +  +        P  +  +++ PA  H++GS P  AAH +
Sbjct: 246 MAGGHPRVQHGIDRV--------PSRRQSKDSAPAKEHAEGSAPAPAAHSM 288


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,221,077
Number of Sequences: 59808
Number of extensions: 308752
Number of successful extensions: 655
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)