Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0838
(573 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, smal... 173 1e-43
U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chai... 101 4e-22
AC025721-3|AAM15614.1| 192|Caenorhabditis elegans Adaptin, smal... 73 1e-13
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 38 0.005
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 38 0.005
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 36 0.027
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 36 0.027
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 33 0.14
Z68879-1|CAA93081.1| 850|Caenorhabditis elegans Hypothetical pr... 31 0.77
U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/med... 27 9.5
>AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 1 protein.
Length = 157
Score = 173 bits (420), Expect = 1e-43
Identities = 78/103 (75%), Positives = 91/103 (88%)
Frame = +1
Query: 244 KEEKTRELITTVLARKPKMCSFLEWKDVKVVYKRYASLYFCCAMEQEDNELLTLELIHRY 423
K++ RELIT +LARKPKMC+FLE+KD+KVVYKRYASLYFCCA+EQ DNEL+TLE+IHRY
Sbjct: 28 KKKICRELITQILARKPKMCAFLEYKDLKVVYKRYASLYFCCAIEQNDNELITLEVIHRY 87
Query: 424 VELLDKYFGXVCELDIIFNFEKAYFILDDWFLGGXLQVNPVKK 552
VELLDKYFG VCELDIIFNFEKAYFILD++ L G +Q K+
Sbjct: 88 VELLDKYFGSVCELDIIFNFEKAYFILDEFLLAGEIQETSKKQ 130
Score = 58.0 bits (134), Expect = 4e-09
Identities = 30/60 (50%), Positives = 34/60 (56%)
Frame = +2
Query: 164 MMQFMLLFSRQGKLRLQKWYVAHPDXXXXXXXEN*LPQC*LENPKCVLSLNGKMLKLCIK 343
MMQ+MLLFSRQGKLRLQKWY A+PD + Q PK L K LK+ K
Sbjct: 1 MMQYMLLFSRQGKLRLQKWYTAYPDKQKKKICRELITQILARKPKMCAFLEYKDLKVVYK 60
>U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chain
(clathrin associatedcomplex) protein 2 protein.
Length = 142
Score = 101 bits (242), Expect = 4e-22
Identities = 43/97 (44%), Positives = 66/97 (68%)
Frame = +1
Query: 244 KEEKTRELITTVLARKPKMCSFLEWKDVKVVYKRYASLYFCCAMEQEDNELLTLELIHRY 423
K++ E+ V R K +F+E+++ K+VY+RYA LYFC ++ DN L LE IH +
Sbjct: 28 KQKLIEEVHACVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDITDNNLYYLEAIHNF 87
Query: 424 VELLDKYFGXVCELDIIFNFEKAYFILDDWFLGGXLQ 534
VE+L++YF VCELD++FNF K Y ++D+ FL G ++
Sbjct: 88 VEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIR 124
>AC025721-3|AAM15614.1| 192|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 3 protein.
Length = 192
Score = 72.9 bits (171), Expect = 1e-13
Identities = 36/100 (36%), Positives = 60/100 (60%), Gaps = 6/100 (6%)
Frame = +1
Query: 244 KEEKTRELITTVLARKPKMCSFLEW------KDVKVVYKRYASLYFCCAMEQEDNELLTL 405
+++ RE V R +C+FLE D +++Y+ YA+LYF ++ ++EL L
Sbjct: 28 QQQIVRETFQLVSKRDDNVCNFLEGGTLIDGNDYRLIYRHYATLYFIFCVDSSESELGIL 87
Query: 406 ELIHRYVELLDKYFGXVCELDIIFNFEKAYFILDDWFLGG 525
+LI +VE LD+ F VCELD+IF+ ++ + IL + +GG
Sbjct: 88 DLIQVFVETLDRCFENVCELDLIFHVDRVHHILGEIVMGG 127
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical
protein K11D2.3a protein.
Length = 422
Score = 37.9 bits (84), Expect = 0.005
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +1
Query: 310 LEWKDVKVVYKRYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGXVCELDIIFNFEK 489
L ++D V+ ++ ++Y A N + L +++ VE+ +YF V E + NF
Sbjct: 50 LTYQDTNFVFIKHTNIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVV 109
Query: 490 AYFILDD 510
Y +LD+
Sbjct: 110 IYELLDE 116
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 37.9 bits (84), Expect = 0.005
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +1
Query: 310 LEWKDVKVVYKRYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGXVCELDIIFNFEK 489
L ++D V+ ++ ++Y A N + L +++ VE+ +YF V E + NF
Sbjct: 50 LTYQDTNFVFIKHTNIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVV 109
Query: 490 AYFILDD 510
Y +LD+
Sbjct: 110 IYELLDE 116
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 35.5 bits (78), Expect = 0.027
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +1
Query: 352 SLYFCCAMEQEDNELLTLELIHRYVELLDKYFGXVCELDIIFNFEKAYFILDD 510
+++ C Q N + E + R+ + + YFG + E ++ NF Y +LD+
Sbjct: 62 NVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDE 114
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 35.5 bits (78), Expect = 0.027
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +1
Query: 352 SLYFCCAMEQEDNELLTLELIHRYVELLDKYFGXVCELDIIFNFEKAYFILDD 510
+++ C Q N + E + R+ + + YFG + E ++ NF Y +LD+
Sbjct: 62 NVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDE 114
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans
clathrin-associated protein homologueprotein.
Length = 441
Score = 33.1 bits (72), Expect = 0.14
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +1
Query: 352 SLYFCCAMEQEDNELLTLELIHRYVELLDKYFGXVCELDIIFNFEKAYFILDD 510
+++ C Q N + + R+ + + YFG + E ++ NF Y +LD+
Sbjct: 62 NVWICAVTRQNVNAAMVFAFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDE 114
>Z68879-1|CAA93081.1| 850|Caenorhabditis elegans Hypothetical
protein K08F4.1 protein.
Length = 850
Score = 30.7 bits (66), Expect = 0.77
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 278 C*LENPKCVLSLNGKMLKLCIKDMHHYISAVLW 376
C E +C LS K+ +LC DM H I+ + W
Sbjct: 467 CDRERLRCDLSTLRKLCELCANDMRHSINTLQW 499
>U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/medium
chain (clathrinassociated complex) protein 3 protein.
Length = 414
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/58 (20%), Positives = 26/58 (44%)
Frame = +1
Query: 352 SLYFCCAMEQEDNELLTLELIHRYVELLDKYFGXVCELDIIFNFEKAYFILDDWFLGG 525
+L+ + E L+ +E +HR ++ +YF + + N + +LD+ G
Sbjct: 63 NLFLVAVITVETPPLMVIEFLHRVIQTFTQYFDEFSDSSMKENCVMVFELLDEMLDNG 120
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,423,881
Number of Sequences: 27780
Number of extensions: 242346
Number of successful extensions: 573
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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