Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0838
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.1  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   5.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   6.6  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   6.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   6.6  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 310 LEWKDVKVVYKRYASLYFCC 369
           +EW  +KV   R  + Y CC
Sbjct: 200 VEWDIIKVPAVRNEAFYICC 219


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 500 MKYAFSKLKMMSSSQTLPKYLS 435
           ++  FSKL    S   L KYLS
Sbjct: 10  LETGFSKLSSSDSKSLLKKYLS 31


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 226 GSSR*AKEEKTRELITTVLAR 288
           GSS+  K  +TRE +T  L R
Sbjct: 425 GSSKDFKTTRTREQVTEALRR 445


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 226 GSSR*AKEEKTRELITTVLAR 288
           GSS+  K  +TRE +T  L R
Sbjct: 340 GSSKDFKTTRTREQVTEALRR 360


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 226 GSSR*AKEEKTRELITTVLAR 288
           GSS+  K  +TRE +T  L R
Sbjct: 659 GSSKDFKTTRTREQVTEALRR 679


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,496
Number of Sequences: 438
Number of extensions: 2957
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)