Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0836
         (597 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11434| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_40462| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_11434| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 866

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 552 EFXARLRTKLKNVI*T*YTWVSEFIKINXGICIRM 448
           EF  +L  ++K+++    TWV E  K+  GIC  +
Sbjct: 261 EFLKKLTKQIKDMMELKGTWVEEESKVRNGICCEL 295


>SB_40462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1580

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 94  FVVRHIFNDFKIWRHTKKKDK 32
           FV+R +F  F  WR T  KD+
Sbjct: 444 FVIREVFTGFHKWRFTDVKDR 464


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,653,488
Number of Sequences: 59808
Number of extensions: 167966
Number of successful extensions: 255
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)