Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0834
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    92   5e-20
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    28   0.84 
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    27   1.9  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   2.6  
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    26   3.4  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   4.5  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   7.8  

>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 91.9 bits (218), Expect = 5e-20
 Identities = 56/160 (35%), Positives = 76/160 (47%), Gaps = 3/160 (1%)
 Frame = +1

Query: 1   KTXPIFKIINNXXXXXXXXXXXXXXXXXXXXXAXCLIIQIITGLFLTIYYTANIEIAFYR 180
           K+ P   + NN                     A  L+IQI+ G+ L  +Y  N+++AF  
Sbjct: 5   KSNPFLALANNYMIDAPEPSNISYFWNFGSLLACVLVIQIVIGILLACFYIPNMDLAFLS 64

Query: 181 VNYICRNVNYG*IIRTLHANGASXFLFAFIYISDEE---FTMNLLT*NMYDLXXXXXXXX 351
           V  I R+VNYG ++R  HANGAS F F F+Y+       +        M           
Sbjct: 65  VERIVRDVNYGFLLRAFHANGAS-FFFIFLYLHIGRGLYYGSYKYPRTMTWNIGVIIFLL 123

Query: 352 XXXXXXXXYVLP*GQISFWGATVITNLLSAIPYLGTILVN 471
                   Y LP  Q+SFWGATVITNLLSA+P++G  LV+
Sbjct: 124 TIITAFLGYCLPANQMSFWGATVITNLLSAVPFIGDDLVH 163



 Score = 33.9 bits (74), Expect = 0.013
 Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = +3

Query: 255 FICIYLHIGRGIYYESFNLKYV*SNWNYNSI---YTNSNCFHRLCLTLRSNIFLG 410
           FI +YLHIGRG+YY S+        WN   I    T    F   CL      F G
Sbjct: 90  FIFLYLHIGRGLYYGSYKYPRT-MTWNIGVIIFLLTIITAFLGYCLPANQMSFWG 143


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = +3

Query: 267 YLHIGRGIYYESFNLKYV*SNWNYNSIYTNSNCFHRLCLTLRSNIFLGGN 416
           YL    G+Y   F+      NWN      +SN  +RLC TL  + FL GN
Sbjct: 118 YLQAQLGLYQPLFD------NWNRLLQLDSSNLEYRLCFTL--SAFLSGN 159


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +3

Query: 303 FNLKYV*SNWNYNSIYTNSNCFHRLCLTLRSNIFLGGNRNYKSIICNPLFRNYISKLNF 479
           +NLK    N +Y   + N      + L+  S + L  +   + I+CN L R+ +   NF
Sbjct: 40  YNLK---DNTSYTFPFENHKNISHIALSPTSTLLLSVDEEGRCILCNFLRRSVLHYFNF 95


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +1

Query: 121 ITGLFLTIYYTANIEIAFYRVNYICR---NVNYG*IIRTLHANGASXFLFAFIYISDE 285
           +TG+F      ++ E  F+R+ ++C     + Y  I  TLH   A  FLF+   +S +
Sbjct: 1   MTGMFFFASLFSSFESLFFRLFFVCSFFFPLLYSFIFATLH---AFVFLFSHTLVSSQ 55


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 354 NSNCFHRLCLTLRSNIFLGGNRNYKSIICNPLFR 455
           N  C+H++C +    IF  G     +  CN + R
Sbjct: 31  NPECYHKMCESCVDRIFTTGPAQCPTPGCNKILR 64


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 183 KLYLPKCKLWLNNSNITC*WSFIXFICIYLHIGRGIYYESFNLK 314
           + Y  KCKLW ++ N +   S+    C    IGRG+  + F+ K
Sbjct: 206 RYYCNKCKLWDDDPNKS---SYHCDDCGICRIGRGLGDDYFHCK 246


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +3

Query: 246 FIXFICIYLHIGRGIYYESFNLKY 317
           ++ ++ I +H+G+ +  + FNL Y
Sbjct: 51  WMSYLSIIMHVGQSLLLQKFNLGY 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,596,280
Number of Sequences: 5004
Number of extensions: 28406
Number of successful extensions: 64
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)