Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0834
         (481 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12207| Best HMM Match : Cytochrom_B_N (HMM E-Value=2.3e-07)         46   1e-05
SB_27597| Best HMM Match : Cytochrom_B_N (HMM E-Value=0)               32   0.21 

>SB_12207| Best HMM Match : Cytochrom_B_N (HMM E-Value=2.3e-07)
          Length = 102

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 21/44 (47%), Positives = 32/44 (72%)
 Frame = +1

Query: 142 IYYTANIEIAFYRVNYICRNVNYG*IIRTLHANGASXFLFAFIY 273
           ++Y A++ +AF  V++I R+VNYG ++R  HANGAS F F  +Y
Sbjct: 1   MHYCADVSLAFASVDHIMRDVNYGFLLRYAHANGASMF-FICLY 43



 Score = 35.9 bits (79), Expect = 0.017
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +3

Query: 255 FICIYLHIGRGIYYESFNLKYV*SNWNYNSI 347
           FIC+Y HIGRG+YY S++   V   WN   I
Sbjct: 39  FICLYAHIGRGLYYGSYSKVEV---WNVGVI 66


>SB_27597| Best HMM Match : Cytochrom_B_N (HMM E-Value=0)
          Length = 135

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 376 YVLP*GQISFWGATVITNLLSAIPYLGTILV 468
           Y LP  QI +W   ++T +  AIP +G+ LV
Sbjct: 64  YSLPRDQIGYWAVKIVTGVPEAIPVIGSPLV 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,777,419
Number of Sequences: 59808
Number of extensions: 179476
Number of successful extensions: 314
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)