Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0834
         (481 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) conta...    92   2e-19
At1g12170.1 68414.m01409 F-box family protein contains F-box dom...    31   0.30 
At5g41680.2 68418.m05065 protein kinase family protein contains ...    29   1.6  
At5g41680.1 68418.m05064 protein kinase family protein contains ...    29   1.6  

>At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) contains
           Pfam profile PF00033: Cytochrome b(N-terminal)/b6/petB;
           ontains Pfam profile PF00032: Cytochrome
           b(C-terminal)/b6/petD; 99% identical to  apocytochrome B
           (GI:6851014), cytochrome b (GI:402962), and Cytochrome b
           (Swiss-Prot:P42792) [Arabidopsis thaliana]
          Length = 393

 Score = 92.3 bits (219), Expect = 2e-19
 Identities = 50/124 (40%), Positives = 75/124 (60%), Gaps = 2/124 (1%)
 Frame = +1

Query: 103 CLIIQIITGLFLTIYYTANIEIAFYRVNYICRNVNYG*IIRTLHANGASXFLF-AFIYIS 279
           CL+IQI+TG+FL ++YT ++++AF  V +I R+V  G ++R +HANGAS FL   +++I 
Sbjct: 45  CLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMHANGASMFLIVVYLHIF 104

Query: 280 DEEFTMNLLT*NMYD-LXXXXXXXXXXXXXXXXYVLP*GQISFWGATVITNLLSAIPYLG 456
              +  +  +   +                   YVLP GQ+SFWGATVIT+L SAIP +G
Sbjct: 105 RGLYHASYSSPREFVWCLGVVIFLLMIVTAFIGYVLPWGQMSFWGATVITSLASAIPVVG 164

Query: 457 TILV 468
             +V
Sbjct: 165 DTIV 168


>At1g12170.1 68414.m01409 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 364

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 90  PTSXMSNNSNYYWIIFNNILHSKY*NSFL*SK-LYLPKCKL-WLNNS 224
           P S +S N N YW++ N   H  +  SF  SK +Y   C L W  NS
Sbjct: 196 PLSDVSLNGNLYWVVSNGETHECFIESFDFSKEIYKCFCTLPWNYNS 242


>At5g41680.2 68418.m05065 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; similar to
           receptor-like protein kinase (GI:4008006) [Arabidopsis
           thaliana]; similar to receptor-like kinase RHG1
           (GI:21239380) (GI:21239382) [Glycine max]
          Length = 333

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +3

Query: 222 SNITC*WSFIXFICIYLHIGRGIYYESFNLKYV*SNWNYNSIYTNSNCFHRLC 380
           S +   W     I I    G  I +E+ + K+V  N   ++I+TNS C+  +C
Sbjct: 147 SQVPLDWESRLRIAIGAARGLAIIHEADDGKFVHGNIKSSNIFTNSKCYGCIC 199


>At5g41680.1 68418.m05064 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; similar to
           receptor-like protein kinase (GI:4008006) [Arabidopsis
           thaliana]; similar to receptor-like kinase RHG1
           (GI:21239380) (GI:21239382) [Glycine max]
          Length = 359

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +3

Query: 222 SNITC*WSFIXFICIYLHIGRGIYYESFNLKYV*SNWNYNSIYTNSNCFHRLC 380
           S +   W     I I    G  I +E+ + K+V  N   ++I+TNS C+  +C
Sbjct: 173 SQVPLDWESRLRIAIGAARGLAIIHEADDGKFVHGNIKSSNIFTNSKCYGCIC 225


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,777,431
Number of Sequences: 28952
Number of extensions: 128756
Number of successful extensions: 216
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)