Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0833
         (594 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    36   0.95 
UniRef50_A5V4N6 Cluster: Pyroglutamyl-peptidase I; n=1; Sphingom...    33   3.8  
UniRef50_Q1FN59 Cluster: Transcription factor CarD; n=1; Clostri...    33   6.7  
UniRef50_Q8I2K6 Cluster: Putative uncharacterized protein PFI150...    33   6.7  
UniRef50_A7E7Z7 Cluster: Putative uncharacterized protein; n=1; ...    33   6.7  
UniRef50_O85152 Cluster: Insecticidal toxin complex protein TcaB...    32   8.8  
UniRef50_Q4Z106 Cluster: Pb-fam-3 protein; n=19; Plasmodium (Vin...    32   8.8  
UniRef50_Q4YYI6 Cluster: Ubiquitin-like protein, putative; n=3; ...    32   8.8  
UniRef50_O16913 Cluster: Seven tm receptor protein 112; n=4; Cae...    32   8.8  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 35.5 bits (78), Expect = 0.95
 Identities = 16/18 (88%), Positives = 16/18 (88%)
 Frame = +2

Query: 188  GRQRLGSATDIAEVHGRR 241
            GRQRLGSA  IAEVHGRR
Sbjct: 969  GRQRLGSAPGIAEVHGRR 986


>UniRef50_A5V4N6 Cluster: Pyroglutamyl-peptidase I; n=1;
           Sphingomonas wittichii RW1|Rep: Pyroglutamyl-peptidase I
           - Sphingomonas wittichii RW1
          Length = 215

 Score = 33.5 bits (73), Expect = 3.8
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -3

Query: 322 ASHYLLNAFFYCPCRQTSIRPICGEWLPSPMDFSNVSGRPKPLPTACLK 176
           A  YL N  FY  C   S RP+    +  P+  ++ +  P P+P+  L+
Sbjct: 138 AGTYLCNQTFYLACHLASSRPMRAGLVHIPLSSAHAAASPTPVPSLALE 186


>UniRef50_Q1FN59 Cluster: Transcription factor CarD; n=1;
           Clostridium phytofermentans ISDg|Rep: Transcription
           factor CarD - Clostridium phytofermentans ISDg
          Length = 168

 Score = 32.7 bits (71), Expect = 6.7
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = -3

Query: 505 RVMQKKRSVYYVVRYIYLTFKVFLCIKDSLSAPI--IIVENTIMTVFENCHNIICTATVD 332
           +V+ K R +YY +R  Y          D+L   +  I+ ++  +++  N HNI C+  +D
Sbjct: 27  KVVPKDR-LYYTLRPYYSDRSTIFTPTDNLKVKMRSILTKDEAVSILNNIHNIDCSWDID 85

Query: 331 FSQASHYLLNAFFYCPCRQ 275
                     A   C C+Q
Sbjct: 86  EKIREMEYKEAIRQCDCKQ 104


>UniRef50_Q8I2K6 Cluster: Putative uncharacterized protein PFI1500w;
            n=2; cellular organisms|Rep: Putative uncharacterized
            protein PFI1500w - Plasmodium falciparum (isolate 3D7)
          Length = 4530

 Score = 32.7 bits (71), Expect = 6.7
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -3

Query: 499  MQKKRSVYYVVRYIYLTFKVFLCIKDSLSAPIIIVENTIMTVFENCHNIIC 347
            MQ K +VYY   Y ++  K+ + I++S S+P  I     ++  EN +  IC
Sbjct: 1613 MQNKETVYY---YKWIKSKIVIDIRNSFSSPYFIRTKNFISFIENTNLNIC 1660


>UniRef50_A7E7Z7 Cluster: Putative uncharacterized protein; n=1;
            Sclerotinia sclerotiorum 1980|Rep: Putative
            uncharacterized protein - Sclerotinia sclerotiorum 1980
          Length = 1225

 Score = 32.7 bits (71), Expect = 6.7
 Identities = 24/80 (30%), Positives = 37/80 (46%)
 Frame = -1

Query: 261  PSVVSGYRRPWTSAMSVADPSRCLPHA*KTPICLMVXLLFLEHRDDYLWLNKLNKADRHL 82
            P++ SG   P  +A   A P+  LP+  + PI L    L  EH   Y + N+        
Sbjct: 1001 PNITSGIPAPSLNADGTAAPANLLPYPVQQPIRLYDRGLITEHYGFYTYFNR-------- 1052

Query: 81   ENRSSLFLKQLNIGDDATSS 22
                S+FLK L++ +D  +S
Sbjct: 1053 ----SIFLKSLSLLNDTNTS 1068


>UniRef50_O85152 Cluster: Insecticidal toxin complex protein TcaB;
           n=1; Photorhabdus luminescens|Rep: Insecticidal toxin
           complex protein TcaB - Photorhabdus luminescens
           (Xenorhabdus luminescens)
          Length = 1189

 Score = 32.3 bits (70), Expect = 8.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 314 MRSLAEINCCSADYIMTVFENCHNSIFDDNNWC 412
           + S    N  S DY  T    CH   ++DNN+C
Sbjct: 345 LSSTGSANLSSKDYATTKLRMCHGQSYNDNNYC 377


>UniRef50_Q4Z106 Cluster: Pb-fam-3 protein; n=19; Plasmodium
           (Vinckeia)|Rep: Pb-fam-3 protein - Plasmodium berghei
          Length = 279

 Score = 32.3 bits (70), Expect = 8.8
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 425 LYTQKHFECEVDITNYIIYRTFFLHYT-HXIIIYLKEIVVCIIRCLI 562
           +Y Q+       + + I +  F L+Y  H I +YL + ++C+I  LI
Sbjct: 228 MYPQRSITINTKVVDNIFFINFILNYAYHNIFLYLVKPIICVIIILI 274


>UniRef50_Q4YYI6 Cluster: Ubiquitin-like protein, putative; n=3;
            Plasmodium (Vinckeia)|Rep: Ubiquitin-like protein,
            putative - Plasmodium berghei
          Length = 1370

 Score = 32.3 bits (70), Expect = 8.8
 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
 Frame = -3

Query: 478  YYVVRYIYLTFKVFLCIKDSLSAPII------IVENTI-MTVFENCHNIICTATVDFSQA 320
            YY    IY+ F +F+ I + +++ II       + N I M+ F     I+  A+V FS+ 
Sbjct: 790  YYNTNSIYVFFNLFVHINNIINSIIIQFNHSNFLNNDISMSSFSRISIILSLASVIFSRL 849

Query: 319  SHYLLNAF--FYCPCRQTSIR---PICGEWLPSPMDFSNVSGRPKPLPTACLKNTN 167
            S++    +  FYC     S R   PI  E+L    +F   S R   +  + + N N
Sbjct: 850  SNFFFVFYDNFYCNNYGRSYRYSEPINHEYLRELRNFYYSSNRNNNIRNSNISNFN 905


>UniRef50_O16913 Cluster: Seven tm receptor protein 112; n=4;
           Caenorhabditis|Rep: Seven tm receptor protein 112 -
           Caenorhabditis elegans
          Length = 346

 Score = 32.3 bits (70), Expect = 8.8
 Identities = 24/80 (30%), Positives = 36/80 (45%)
 Frame = -3

Query: 508 MRVMQKKRSVYYVVRYIYLTFKVFLCIKDSLSAPIIIVENTIMTVFENCHNIICTATVDF 329
           +R   K    Y  +   +  F +F  I +S+  PI+ +ENT  T F     +I     D+
Sbjct: 32  IRTRGKTLGTYKYLMSFFSFFSIFYAIVESILRPIMHIENT--TFF-----LISRKRFDY 84

Query: 328 SQASHYLLNAFFYCPCRQTS 269
           S      +N+ FYC C  TS
Sbjct: 85  STRLG-KINSAFYCACFATS 103


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 571,906,251
Number of Sequences: 1657284
Number of extensions: 11367073
Number of successful extensions: 27795
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 26939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27789
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41488046300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)