Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0833
         (594 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   2.6  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   3.4  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   4.5  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   5.9  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 7/32 (21%), Positives = 19/32 (59%)
 Frame = -3

Query: 466 RYIYLTFKVFLCIKDSLSAPIIIVENTIMTVF 371
           +YI      ++C+  +++ P++I+ N  M ++
Sbjct: 127 QYINYETDYYVCLAMTITGPLVIIGNIAMELW 158


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 454 GRYNELHNIPNVFFALHAXDNYLFKRNCCVYYSLFNLCRAMVY 582
           G +NEL N+  V  +++   N+LF        S F++C    Y
Sbjct: 216 GVHNELCNLCQVANSIYGFQNFLF------VLSTFSICITQFY 252


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 544 YYSLFNLCRAMVY 582
           YY++   CR MVY
Sbjct: 329 YYNILYFCRIMVY 341


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 6   RGAERPKMLHHHQYLTALRTGSNDSPN 86
           RG+  P+   H+     L+  +ND+ N
Sbjct: 99  RGSSTPESPEHYYNQKTLQANNNDASN 125


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,089
Number of Sequences: 336
Number of extensions: 3158
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)