Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0833
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    30   0.29 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    28   0.89 
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    27   2.1  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    27   2.1  
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po...    26   3.6  
SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|ch...    25   8.3  

>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 476 LCSSLYLPHIQSVFVYKGFIISTN-YYRRKYYYDSFRKL 363
           LC++  L H+    VY+G++   N   RRK  +++ RKL
Sbjct: 3   LCNNQLLDHLDCNAVYRGYVSQENKVKRRKRLFNAIRKL 41


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 490  KRSVYYVVRYIYLTFKVFLCIKDSLSA 410
            ++S+Y    Y+YLT KVFL I  + SA
Sbjct: 1069 EKSLYKGFCYLYLTLKVFLSISSNRSA 1095


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -1

Query: 372 SKTVII*SALQQLISAKLRITY*MLFFIALVGRRAYGPSVVS 247
           S ++++  ++   I++KL   + +LFFI + G   YG  ++S
Sbjct: 204 STSILLAVSILSWIASKLWFRFFILFFIIITGTIVYGSCMIS 245


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -3

Query: 457 YLTFKVFLC-IKDSLSAPIIIVENTIMTVFENCHNIICTATVDFSQASHYLLNAFFYCP 284
           YL FKV +  ++  L+A  +   +  + +++   N+I T         H++ NAFF  P
Sbjct: 234 YLKFKVEIALVRGMLTAHNLKAPSLKLPLYKFVKNVIATVVTVPVAELHHIRNAFFNIP 292


>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 235

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 356 YNLHCNS*FQPSFALLTKC-FFLLPL 282
           +++HCNS F PSF LL     FLLP+
Sbjct: 135 FDVHCNS-FFPSFVLLYVIQLFLLPV 159


>SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 105

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 475 NIPNVFFALHAXDNYLFKRNCCVYYSLFNLCR 570
           N+ NV+F+L    N   + N C Y  +F+L R
Sbjct: 29  NVTNVYFSLRILLNRQNEGNNCKYKLVFSLYR 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,430,976
Number of Sequences: 5004
Number of extensions: 50490
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)