Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0833
         (594 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4939| Best HMM Match : 7tm_1 (HMM E-Value=0.049)                    29   2.1  
SB_25029| Best HMM Match : Collagen (HMM E-Value=0.38)                 29   2.8  
SB_43976| Best HMM Match : I-set (HMM E-Value=0.0035)                  28   4.9  
SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_2814| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.5  

>SB_4939| Best HMM Match : 7tm_1 (HMM E-Value=0.049)
          Length = 764

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 272 EHTAHLW*VVTVAHGLQQCQWQTQAAAYRMLKKHQ 168
           +HT H+   V  A GL+   W    A Y   +KHQ
Sbjct: 162 DHTNHITYTVASAFGLRVIMWGCSIAVYITARKHQ 196


>SB_25029| Best HMM Match : Collagen (HMM E-Value=0.38)
          Length = 388

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 229 PWATVTTHHRWAVCSSAYKGNKKKHL 306
           PWAT    + WA  ++ Y G +++ L
Sbjct: 21  PWATTAATYPWATTAATYLGQRRRRL 46


>SB_43976| Best HMM Match : I-set (HMM E-Value=0.0035)
          Length = 285

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 307 LNAFFYCPCRQTSIRPICGEWLPSPMDFSNV 215
           LNA FYC  R     PI   WL +  + S++
Sbjct: 21  LNALFYCEARSIVSSPISYTWLVNDTELSSL 51


>SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 239 VAHGLQQCQ-WQTQAAAYRMLKKHQFV*WXACSFSNIE 129
           + +  Q C+ W+  A    + KKH    W  C+ SNIE
Sbjct: 23  LVNAAQVCKLWREAAGVSSLWKKHCLRKWMFCNLSNIE 60


>SB_2814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -1

Query: 192 LPHA*KTPICLMVXLLFLEHRDDYLWLNK--LNKADRHLENRSSLFLK 55
           L H   TP+CL+V L ++E      WL++   NKADR+  +     LK
Sbjct: 139 LSHEVVTPVCLIVLLQYIE------WLSRDLPNKADRYTRDLKQSRLK 180


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,212,529
Number of Sequences: 59808
Number of extensions: 373276
Number of successful extensions: 864
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)