Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0833
         (594 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022972-2|AAC48242.1|  346|Caenorhabditis elegans Seven tm rece...    32   0.27 
Z93389-1|CAB07668.1|  346|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AF036704-1|AAB88560.2|  293|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z82058-1|CAB04862.2|  352|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z92838-6|CAB07411.1|   84|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U49449-1|AAB00117.1|  339|Caenorhabditis elegans olfactory recep...    28   5.8  
U42830-6|AAC48279.2|  339|Caenorhabditis elegans Odorant respons...    28   5.8  
U40953-5|AAB52648.1|  385|Caenorhabditis elegans G protein, alph...    28   5.8  
AY008128-1|AAG32081.1|  385|Caenorhabditis elegans heterotrimeri...    28   5.8  
AL110484-7|CAB54398.1|  286|Caenorhabditis elegans Hypothetical ...    28   5.8  

>AF022972-2|AAC48242.1|  346|Caenorhabditis elegans Seven tm
           receptor protein 112 protein.
          Length = 346

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 24/80 (30%), Positives = 36/80 (45%)
 Frame = -3

Query: 508 MRVMQKKRSVYYVVRYIYLTFKVFLCIKDSLSAPIIIVENTIMTVFENCHNIICTATVDF 329
           +R   K    Y  +   +  F +F  I +S+  PI+ +ENT  T F     +I     D+
Sbjct: 32  IRTRGKTLGTYKYLMSFFSFFSIFYAIVESILRPIMHIENT--TFF-----LISRKRFDY 84

Query: 328 SQASHYLLNAFFYCPCRQTS 269
           S      +N+ FYC C  TS
Sbjct: 85  STRLG-KINSAFYCACFATS 103


>Z93389-1|CAB07668.1|  346|Caenorhabditis elegans Hypothetical
           protein T13F3.1 protein.
          Length = 346

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = -3

Query: 496 QKKRSVYYVVRYIYLTFKVFLCIKDSLSAPIIIVENTIMTVFEN 365
           +K  S  Y++ YI L F++F  I DS+S P     ++++ VF+N
Sbjct: 37  KKIGSYKYLMIYISL-FQIFYSIMDSISLPTYHAYSSVLLVFKN 79


>AF036704-1|AAB88560.2|  293|Caenorhabditis elegans Hypothetical
           protein ZK185.3 protein.
          Length = 293

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 530 LLNK*LSNACNAKKTFGILCSSLYLP 453
           L NK L+  CN ++ + + C++ YLP
Sbjct: 117 LANKYLTTCCNIRENYNVPCNNFYLP 142


>Z82058-1|CAB04862.2|  352|Caenorhabditis elegans Hypothetical
           protein T27C5.1 protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 478 IPNVFFALHAXDNYLFKRNCCVYY 549
           IP + F L    +YLF+  C VYY
Sbjct: 212 IPLILFVLSVVGHYLFQMGCLVYY 235


>Z92838-6|CAB07411.1|   84|Caenorhabditis elegans Hypothetical
           protein T03D8.7 protein.
          Length = 84

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 320 SLAEINCCS-ADYIMTVFENCHNSIFDDNNWC 412
           + A   CCS A   M + ++C N    +NNWC
Sbjct: 14  AFAYSQCCSGAPLGMCINQHCPNGTMCNNNWC 45


>U49449-1|AAB00117.1|  339|Caenorhabditis elegans olfactory receptor
           Odr-10 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 21/80 (26%), Positives = 35/80 (43%)
 Frame = -3

Query: 508 MRVMQKKRSVYYVVRYIYLTFKVFLCIKDSLSAPIIIVENTIMTVFENCHNIICTATVDF 329
           ++   K    Y  +   +  F +F  I + +  PI+ +ENT  T F     +I     ++
Sbjct: 32  LKTRGKNLGTYKYLMAFFSVFSIFYAIIEFILRPIMHIENT--TFF-----LISRKRFNY 84

Query: 328 SQASHYLLNAFFYCPCRQTS 269
           S      +N+ FYC C  TS
Sbjct: 85  S-TKLGKINSAFYCACFATS 103


>U42830-6|AAC48279.2|  339|Caenorhabditis elegans Odorant response
           abnormal protein10 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 21/80 (26%), Positives = 35/80 (43%)
 Frame = -3

Query: 508 MRVMQKKRSVYYVVRYIYLTFKVFLCIKDSLSAPIIIVENTIMTVFENCHNIICTATVDF 329
           ++   K    Y  +   +  F +F  I + +  PI+ +ENT  T F     +I     ++
Sbjct: 32  LKTRGKNLGTYKYLMAFFSVFSIFYAIIEFILRPIMHIENT--TFF-----LISRKRFNY 84

Query: 328 SQASHYLLNAFFYCPCRQTS 269
           S      +N+ FYC C  TS
Sbjct: 85  S-TKLGKINSAFYCACFATS 103


>U40953-5|AAB52648.1|  385|Caenorhabditis elegans G protein, alpha
           subunit protein 5 protein.
          Length = 385

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 406 IIIVENTIMTVFENCHNIICTATVDFSQASHYLLNAFFY 290
           I ++ N I+  F+N  NII  + +  +Q    L+  F Y
Sbjct: 70  IFVIRNNIIDAFKNICNIILHSDITVTQEEKVLVKLFAY 108


>AY008128-1|AAG32081.1|  385|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 385

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 406 IIIVENTIMTVFENCHNIICTATVDFSQASHYLLNAFFY 290
           I ++ N I+  F+N  NII  + +  +Q    L+  F Y
Sbjct: 70  IFVIRNNIIDAFKNICNIILHSDITVTQEEKVLVKLFAY 108


>AL110484-7|CAB54398.1|  286|Caenorhabditis elegans Hypothetical
           protein Y38E10A.7 protein.
          Length = 286

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 503 CNAKKTFGILCSSLYLPHIQSVFVYKGFIISTNY 402
           CN K   G+ CSS +L  I+SV  Y+G  I + Y
Sbjct: 202 CNTKN--GLKCSSDFLTDIRSVSAYEGQYIFSIY 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,582,266
Number of Sequences: 27780
Number of extensions: 292605
Number of successful extensions: 706
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)