Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0833
(594 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ855486-1|ABH88173.1| 104|Apis mellifera chemosensory protein ... 26 0.24
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 26 0.24
AB183889-1|BAD86829.1| 316|Apis mellifera Mos protein. 23 2.3
DQ384990-1|ABD51778.1| 92|Apis mellifera allergen Api m 6 vari... 22 5.2
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 22 5.2
AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein. 21 6.9
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 21 6.9
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 21 9.1
DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex det... 21 9.1
DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex det... 21 9.1
DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex det... 21 9.1
DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex det... 21 9.1
>DQ855486-1|ABH88173.1| 104|Apis mellifera chemosensory protein 5
protein.
Length = 104
Score = 26.2 bits (55), Expect = 0.24
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -2
Query: 530 LLNK*LSNACNAKKTFGILCSSLYLPHIQSVFVYKGFIISTNYYRRKYY 384
LL + L+N CN + I ++ +P +Q + Y+ +I Y KYY
Sbjct: 56 LLPEVLNNHCNRCTSRQIGIANTLIPFMQQNYPYEWQLILRRYKIMKYY 104
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 26.2 bits (55), Expect = 0.24
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 443 FECEVDITNYIIYRTFFLHYTHXIIIYLKEIVVCIIRCLICAVP 574
F E DIT YII R L YT +I L +++ + L+ +P
Sbjct: 217 FPTETDITFYIIIRRKTLFYTVNLI--LPTVLISFLCVLVFYLP 258
Score = 21.8 bits (44), Expect = 5.2
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -1
Query: 582 IHHGTAQIKQRIIHTTIS 529
+HH +I +++ HTT S
Sbjct: 400 LHHPNCKINRKVHHTTSS 417
>AB183889-1|BAD86829.1| 316|Apis mellifera Mos protein.
Length = 316
Score = 23.0 bits (47), Expect = 2.3
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = +2
Query: 518 IYLKEIVVCIIRCLICAVPWC 580
I +K +CI++ + CA+ +C
Sbjct: 151 ILIKNERICILKSITCALQFC 171
>DQ384990-1|ABD51778.1| 92|Apis mellifera allergen Api m 6 variant
1 precursor protein.
Length = 92
Score = 21.8 bits (44), Expect = 5.2
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +1
Query: 265 VCSSAYKGNKKKHLVSNAKLG 327
VC Y NKKK V +K G
Sbjct: 72 VCRLGYLRNKKKVCVPRSKCG 92
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 21.8 bits (44), Expect = 5.2
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -3
Query: 514 YXMRVMQKKRSVYYVVRYIYLTFKVFLCIKDSL 416
Y VM +VYY+V + F F+ ++ L
Sbjct: 64 YAAAVMSCWMNVYYIVILAWAIFYFFMSMRSEL 96
>AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein.
Length = 349
Score = 21.4 bits (43), Expect = 6.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 415 IMNPLYTKTL*M*GRYNELHNIPNVFFAL 501
+ N YT+ L + R+NE H + VF+++
Sbjct: 18 VNNSNYTELLPIDMRFNEGHIVSIVFYSV 46
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 21.4 bits (43), Expect = 6.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 588 NLIHHGTAQIKQRIIHTTISFK*II 514
N++H+G I Q I +FK II
Sbjct: 510 NIVHYGIGFITQSDIELANTFKAII 534
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 21.0 bits (42), Expect = 9.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -2
Query: 509 NACNAKKTFGILCSSLYL 456
N C A + FG LC + L
Sbjct: 192 NLCMAGRLFGYLCPGMAL 209
>DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.0 bits (42), Expect = 9.1
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = -2
Query: 407 NYYRRKYYYDSFRKLS*YNLH 345
NY Y ++++KL YN++
Sbjct: 96 NYNNNNYNNNNYKKLQYYNIN 116
>DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.0 bits (42), Expect = 9.1
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = -2
Query: 407 NYYRRKYYYDSFRKLS*YNLH 345
NY Y ++++KL YN++
Sbjct: 96 NYNNNNYNNNNYKKLQYYNIN 116
>DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.0 bits (42), Expect = 9.1
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = -2
Query: 407 NYYRRKYYYDSFRKLS*YNLH 345
NY Y ++++KL YN++
Sbjct: 96 NYNNNNYNNNNYKKLQYYNIN 116
>DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.0 bits (42), Expect = 9.1
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = -2
Query: 407 NYYRRKYYYDSFRKLS*YNLH 345
NY Y ++++KL YN++
Sbjct: 96 NYNNNNYNNNNYKKLQYYNIN 116
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,593
Number of Sequences: 438
Number of extensions: 3554
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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