Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0833
         (594 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g34130.1 68414.m04234 oligosaccharyl transferase STT3 subunit...    29   3.1  
At2g17120.1 68415.m01976 peptidoglycan-binding LysM domain-conta...    28   5.4  
At5g59270.1 68418.m07427 lectin protein kinase family protein co...    27   7.1  
At5g55780.1 68418.m06952 DC1 domain-containing protein contains ...    27   9.4  
At4g22200.1 68417.m03209 potassium channel protein 2 (AKT2) (AKT...    27   9.4  

>At1g34130.1 68414.m04234 oligosaccharyl transferase STT3 subunit,
           putative similar to SP|P39007 Oligosaccharyl transferase
           STT3 subunit {Saccharomyces cerevisiae}; contains Pfam
           profile PF02516: Oligosaccharyl transferase STT3 subunit
          Length = 735

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -1

Query: 285 LVGRRAYGPSVVSGYRRPWTSAM-SVADPSRCLPH 184
           LVG  A G    SGY  PWT    S+ DP+    H
Sbjct: 332 LVGGVAVGVGTASGYISPWTGRFYSLLDPTYAKDH 366


>At2g17120.1 68415.m01976 peptidoglycan-binding LysM
           domain-containing protein contains Pfam profile PF01476:
           LysM domain; supporting cDNA
           gi|16226688|gb|AF428464.1|AF428464
          Length = 350

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 427 KDSLSAPIIIVENTIMTVFENCHNIICTA 341
           KDSL AP+++  N+ +    NC    C A
Sbjct: 227 KDSLDAPLLLSNNSYVFTANNCVKCTCDA 255


>At5g59270.1 68418.m07427 lectin protein kinase family protein
           contains Pfam domains PF00139: Legume lectins beta
           domain and PF00069: Protein kinase domain
          Length = 668

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/50 (30%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
 Frame = -1

Query: 168 ICLMVXLLFL-EHRDDYLWLNKLNKADRHLENRSSLFLKQLNIGDDATSS 22
           IC+ V  L L + RD++++ +  ++AD HL+  +S+   +L++ ++ T S
Sbjct: 14  ICVQVLSLVLAQDRDEFVY-HDFSQADLHLDGMASIDDGRLHLTNNTTKS 62


>At5g55780.1 68418.m06952 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 685

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -3

Query: 313 YLLNAFFYCPCRQTSIRPICGEWLPSPMDFSNVSGRPKPL 194
           Y  N +++C   + S+ P+C    P P+   +    P PL
Sbjct: 196 YTPNMYYHCTTCELSMNPVCA-MRPVPLVVDHPKSHPHPL 234


>At4g22200.1 68417.m03209 potassium channel protein 2 (AKT2) (AKT3)
           identical to potassium channel [Arabidopsis thaliana]
           gi|1100898|gb|AAA97865; Note: also identical to AKT3
           [Arabidopsis thaliana] gi|1172218|gb|AAA96153, which is
           a truncated version of AKT2, PMID:10852932; member of
           the 1 pore, 6 transmembrane (1P/6TM- Shaker-type) K+
           channel family, PMID:11500563; identical to cDNA
           inward-rectifying K+ channel (AKT3) GI:1172219
          Length = 802

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -2

Query: 494 KKTFGILCSSLYLPHIQSVFVYKG 423
           K  +  +C  L+LP ++ V+++KG
Sbjct: 374 KSIYKSICQHLFLPSVEKVYLFKG 397


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,433,280
Number of Sequences: 28952
Number of extensions: 251507
Number of successful extensions: 543
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)