Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0826
(337 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 28 0.44
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 27 0.58
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 1.8
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 3.1
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 25 4.1
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 25 4.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 4.1
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 24 5.4
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S... 24 7.1
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 23 9.4
SPAC513.03 |mfm2||M-factor precursor Mfm2|Schizosaccharomyces po... 23 9.4
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 9.4
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 27.9 bits (59), Expect = 0.44
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -2
Query: 306 REQGHQDHHRGPAPRHSGNTRRPKPTELSACCRERSETPRHRNKPS 169
R++ Q++ P P SG +P P E ++ S P KPS
Sbjct: 231 RKEKSQENKPKPTPFGSGGPSKPTPFESHGPAKQISVQPSEHPKPS 276
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 27.5 bits (58), Expect = 0.58
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -2
Query: 279 RGPAPRHSGNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPHH 136
R P+P H +R P E S RS +PR+R++ P RSP +
Sbjct: 116 RSPSP-HEARSRSPYNDERSD---RRSMSPRYRSRSRSPDGRSRSPDY 159
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 1.8
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -1
Query: 337 PPVTPPGGAEP*AGTSGPPQRPGAQAQRKH 248
PP PP G EP PP PG +RK+
Sbjct: 10 PPPPPPPGFEP-PSQPPPPPPPGYVKKRKN 38
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.0 bits (52), Expect = 3.1
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -2
Query: 312 QSREQGHQDHHRGPAPRHSGNTRRPKPTELS 220
QS G R P+PR R P P+ LS
Sbjct: 337 QSLRLGSLHRSRSPSPRSGRPRRSPSPSHLS 367
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 24.6 bits (51), Expect = 4.1
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -2
Query: 300 QGHQDHHRGPAPRHSGNTRRPKPTELSACCRERSETPRH 184
+G HH+G + G PKP + S + E P+H
Sbjct: 151 KGKGKHHKGKHAKGKGKKSHPKPEDDSVFFDD--ERPKH 187
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 24.6 bits (51), Expect = 4.1
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -2
Query: 204 RSETPRHRNKPSRPVWSRRSPHH 136
R + R N P P W+ R+ HH
Sbjct: 885 REQYERSLNLPMGPEWTTRASHH 907
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.6 bits (51), Expect = 4.1
Identities = 11/51 (21%), Positives = 20/51 (39%)
Frame = -2
Query: 282 HRGPAPRHSGNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPHHFH 130
H +P + ++ ++ R +S+ RH S S+ HH H
Sbjct: 1260 HSNASPSPTSSSMASAAPARTSVSRSKSKAERHETSTSSRKSSKSGEHHHH 1310
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 24.2 bits (50), Expect = 5.4
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = -2
Query: 282 HRGPAPRHSGNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPH 139
++ P P SG TR L C R + ++K +W+ + H
Sbjct: 167 YKPPGPPKSGFTRSFNNDTLMVCPRCQEPLGTSKSKEKSALWATKCGH 214
>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 23.8 bits (49), Expect = 7.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 305 VSRDIRTTTEARRPGTAE 252
V+R +RT+T RRP T E
Sbjct: 21 VARKVRTSTTFRRPKTLE 38
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 23.4 bits (48), Expect = 9.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 206 SRQQALSSVGFGRRVFPLCL 265
SR++AL + F +FPLCL
Sbjct: 545 SRKRALVRISFLDGLFPLCL 564
>SPAC513.03 |mfm2||M-factor precursor Mfm2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 44
Score = 23.4 bits (48), Expect = 9.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 105 SSSISKYYNGNGVDSVETKQVE 170
SSSI YN N D V+T+ ++
Sbjct: 10 SSSIVNAYNNNPTDVVKTQNIK 31
>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 23.4 bits (48), Expect = 9.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 273 PAPRHSGNTRRPKPTELS 220
P+P HS T KPT+LS
Sbjct: 420 PSPMHSSFTVSIKPTQLS 437
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,395,146
Number of Sequences: 5004
Number of extensions: 25203
Number of successful extensions: 96
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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