Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0826
         (337 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   1.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   4.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   5.3  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   5.3  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    20   9.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          20   9.2  
AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor pro...    20   9.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   9.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 16/64 (25%), Positives = 24/64 (37%)
 Frame = -1

Query: 334 PVTPPGGAEP*AGTSGPPQRPGAQAQRKHSASEADRAERLLPGALRDAPSPE*TFSTCLV 155
           P+      +P +G  GP   P    Q     S  + ++   PG    AP P    S  ++
Sbjct: 7   PIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP-PSQNPSQMMI 65

Query: 154 STES 143
           S  S
Sbjct: 66  SPAS 69


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 295 TSGPPQRPGAQAQRKHSASEADRAERL 215
           T+GPP  P    + +  A   DR  R+
Sbjct: 381 TTGPPPGPTPAQKARMRALNIDRVSRV 407


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 5/13 (38%), Positives = 11/13 (84%)
 Frame = +3

Query: 123 YYNGNGVDSVETK 161
           Y NG+G++S++ +
Sbjct: 824 YVNGSGIESIQNR 836


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 13/47 (27%), Positives = 15/47 (31%)
 Frame = -1

Query: 301 AGTSGPPQRPGAQAQRKHSASEADRAERLLPGALRDAPSPE*TFSTC 161
           A  +G P +       K           LLP  L   PS     STC
Sbjct: 534 AAAAGQPSKRNGGETNKQELKRLKSTVSLLPLPLARTPSVMSASSTC 580


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 337 PPVTPPGG 314
           PPVTPP G
Sbjct: 45  PPVTPPQG 52


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 239 GRRVFPLCLGAGP 277
           GRR FP   G GP
Sbjct: 30  GRRPFPTFPGQGP 42


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -2

Query: 237 KPTELSACCRERSETPRHRNKPSRPVWSRRSPHH 136
           KPT L A   E+    RH  +  +   + R  H+
Sbjct: 140 KPTPLGAVATEKMFVARHLAETPKNTSAVRYTHY 173


>AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor
           protein.
          Length = 33

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 239 GRRVFPLCLGAGP 277
           GRR FP   G GP
Sbjct: 16  GRRPFPTFPGQGP 28


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 7/18 (38%), Positives = 8/18 (44%)
 Frame = -2

Query: 282 HRGPAPRHSGNTRRPKPT 229
           HRG +P H        PT
Sbjct: 329 HRGSSPHHQHGNHTMGPT 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,581
Number of Sequences: 438
Number of extensions: 2085
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)