Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0826
(337 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g27060.1 68414.m03299 regulator of chromosome condensation (R... 35 0.012
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family... 31 0.25
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 30 0.33
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 30 0.33
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 29 0.77
At5g45350.1 68418.m05567 proline-rich family protein contains pr... 29 1.0
At3g60840.1 68416.m06806 microtubule associated protein (MAP65/A... 27 2.4
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 27 2.4
At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containi... 27 2.4
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 27 2.4
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 27 2.4
At5g51300.2 68418.m06360 splicing factor-related contains simila... 27 3.1
At5g51300.1 68418.m06359 splicing factor-related contains simila... 27 3.1
At5g49700.1 68418.m06153 DNA-binding protein-related contains Pf... 27 3.1
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 27 4.1
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family... 27 4.1
At5g45080.1 68418.m05528 disease resistance protein-related weak... 26 5.4
At4g32900.2 68417.m04682 expressed protein 26 5.4
At4g32900.1 68417.m04681 expressed protein 26 5.4
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 26 5.4
At5g35750.1 68418.m04281 histidine kinase (AHK2) identical to hi... 26 7.2
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 26 7.2
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 26 7.2
At2g07776.2 68415.m00891 hypothetical protein 26 7.2
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 26 7.2
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 26 7.2
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 25 9.5
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 25 9.5
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 25 9.5
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 25 9.5
At2g07630.1 68415.m00881 hypothetical protein 25 9.5
At1g69740.1 68414.m08025 porphobilinogen synthase, putative / de... 25 9.5
At1g21630.1 68414.m02708 calcium-binding EF hand family protein ... 25 9.5
>At1g27060.1 68414.m03299 regulator of chromosome condensation
(RCC1) family protein low similiarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 386
Score = 35.1 bits (77), Expect = 0.012
Identities = 19/40 (47%), Positives = 24/40 (60%)
Frame = +3
Query: 198 LSAPGSKRSALSASDAECFRCAWAPGLCGGPDVPAHGSAP 317
+SA G +A+SA D + F +W G CGGPDV A S P
Sbjct: 211 ISANGDHSAAISA-DGQFF--SWGRGFCGGPDVHAPQSLP 247
>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; related to hydroxyproline-rich
glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
Length = 219
Score = 30.7 bits (66), Expect = 0.25
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Frame = -2
Query: 297 GHQDHHRGPAPRHSGNTRRPKPTELSACCRERSETP-----RHR--NKPSRPVWSRRSPH 139
GH H R P P +G+ R P ++AC R P HR PS PV +
Sbjct: 20 GH--HRRSPPPATTGHHHRSPPPAITACHHRRPPLPATTAGHHRQLRPPSIPVTTNTG-- 75
Query: 138 HFHC 127
H HC
Sbjct: 76 HRHC 79
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 30.3 bits (65), Expect = 0.33
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -2
Query: 336 RRSPLRAVQSREQGHQDHHRGPAPRHSGNTRRPKPTELSACCRERSETPRHRNKPSRPVW 157
RRSP ++ SR G + R P+PR S + R + L + +E S++P + P+
Sbjct: 242 RRSPAKST-SRSPGPRSKSRSPSPRRSRSRSR---SPLPSVQKEGSKSPSKPSPAKSPIH 297
Query: 156 SR 151
+R
Sbjct: 298 TR 299
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 30.3 bits (65), Expect = 0.33
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -2
Query: 336 RRSPLRAVQSREQGHQDHHRGPAPRHSGNTRRPKPTELSACCRERSETPRHRNKPSRPVW 157
RRSP ++ SR G + R P+PR S + R + L + +E S++P + P+
Sbjct: 242 RRSPAKST-SRSPGPRSKSRSPSPRRSRSRSR---SPLPSVQKEGSKSPSKPSPAKSPIH 297
Query: 156 SR 151
+R
Sbjct: 298 TR 299
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 29.1 bits (62), Expect = 0.77
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = -1
Query: 337 PPVTPPGGA---EP*AGTSGPPQRPGAQAQRKHSASEADRAERLL 212
PP PPGG P G PP PGA + ++ RA L+
Sbjct: 681 PPPPPPGGGPPPPPGGGPPPPPPPPGALGRGAGGGNKVHRAPELV 725
>At5g45350.1 68418.m05567 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 177
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 267 APGLCGGPDVPAHGSAPPGG 326
APG G P P HG PP G
Sbjct: 73 APGYGGYPPAPGHGGYPPAG 92
>At3g60840.1 68416.m06806 microtubule associated protein
(MAP65/ASE1) family protein low similarity to protein
regulating cytokinesis 1 (PRC1) [Homo sapiens]
GI:2865521; contains Pfam profile PF03999: Microtubule
associated protein (MAP65/ASE1 family)
Length = 648
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +1
Query: 124 TTMEMVWTPSRPNRSRRFIPVTGRL*ALPAASAQLCRLRTPSVSAVPGR 270
TT E + TP +R +P T PAAS + TP AV R
Sbjct: 586 TTKERILTPKTNEEKKRAVPTT------PAASVAMTEATTPFTPAVEKR 628
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = -2
Query: 285 HHRGPAPRHSGNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPHHFH 130
++R P+ N R PK S S++ RH + PS W HH H
Sbjct: 466 YNRSPSTHIGHNYRSPKFN--SGGHYPGSQSSRHHSGPSPSRWQPSHQHHHH 515
>At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 579
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/56 (21%), Positives = 26/56 (46%)
Frame = -2
Query: 297 GHQDHHRGPAPRHSGNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPHHFH 130
GH+ + G P++ G + + + + TP+ + +P P S +SP+ +
Sbjct: 146 GHRPQYGGQRPQYGGPGNNYQNQNVQQSNQSQYYTPQQQQQPQPPRSSNQSPNQMN 201
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 27.5 bits (58), Expect = 2.4
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Frame = -1
Query: 337 PPVTPPGGAEP*AGTSGPPQR---PGAQAQRKHSASEADRAERLLPGALRDAPSPE*TFS 167
PP TPP A P + PP P A AS + P D+PSP + S
Sbjct: 83 PPATPPPVASPPPPVASPPPATPPPVATPPPAPLASPPAQVPAPAPTTKPDSPSPSPSSS 142
Query: 166 TCLVSTES 143
L S+++
Sbjct: 143 PPLPSSDA 150
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 27.5 bits (58), Expect = 2.4
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Frame = -1
Query: 337 PPVTPPGGAEP*AGTSGPPQR---PGAQAQRKHSASEADRAERLLPGALRDAPSPE*TFS 167
PP TPP A P + PP P A AS + P D+PSP + S
Sbjct: 83 PPATPPPVASPPPPVASPPPATPPPVATPPPAPLASPPAQVPAPAPTTKPDSPSPSPSSS 142
Query: 166 TCLVSTES 143
L S+++
Sbjct: 143 PPLPSSDA 150
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = -1
Query: 337 PPVTPPGGAEP*AGTSG-PP--QRPGAQAQRKHS 245
PP+ PPG P T G PP Q PGA ++++
Sbjct: 561 PPIAPPGPPAPQPPTQGYPPSNQPPGAYPSQQYA 594
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = -1
Query: 337 PPVTPPGGAEP*AGTSG-PP--QRPGAQAQRKHS 245
PP+ PPG P T G PP Q PGA ++++
Sbjct: 561 PPIAPPGPPAPQPPTQGYPPSNQPPGAYPSQQYA 594
>At5g49700.1 68418.m06153 DNA-binding protein-related contains Pfam
domain PF03479: Domain of unknown function (DUF296),
found in AT-hook motifs Pfam:PF02178
Length = 276
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = -2
Query: 312 QSREQGHQDHHRGPAPRHSGNTRRPK--PTELSACCRERSETPRHRNKPSRPVWSRR 148
Q ++Q Q H + H +T P + + R R P +NKP PV+ R
Sbjct: 21 QQQQQQQQQQHSLTSHFHLSSTVTPTVDDSSIEVVRRPRGRPPGSKNKPKPPVFVTR 77
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 26.6 bits (56), Expect = 4.1
Identities = 19/72 (26%), Positives = 29/72 (40%)
Frame = -2
Query: 336 RRSPLRAVQSREQGHQDHHRGPAPRHSGNTRRPKPTELSACCRERSETPRHRNKPSRPVW 157
R L + QG ++ R A + R P S +ER+ P+ ++ +R
Sbjct: 400 RERILERREKERQGERERERKRALEIKRD-RTPTARATSKDTKERTPVPKSISRDARSSS 458
Query: 156 SRRSPHHFHCSI 121
RR HH SI
Sbjct: 459 LRRDAHHREASI 470
>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 589
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = -1
Query: 337 PPVTPPGGAEP*AGTSGPPQRPGAQAQRKHSASEADRAERLLP 209
PP PP A P PP+ G K ++ + R ER P
Sbjct: 72 PPPPPPPSAPPPL-VPDPPRHQGPNDHEKGASKQVGRRERAKP 113
>At5g45080.1 68418.m05528 disease resistance protein-related weak
similarity to disease resistance protein rps4-RLD
[Arabidopsis thaliana] GI:5823585; contains Pfam profile
PF01582: TIR domain
Length = 392
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 337 PPVTPPGGAEP*AGTSGPPQRPGAQAQRKHSA 242
PP P G A P G+ P ++P +A ++ S+
Sbjct: 202 PPKKPKGEANPQGGSMVPARKPEREASQEGSS 233
>At4g32900.2 68417.m04682 expressed protein
Length = 139
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 277 RPGAQAQRKHSASEADRAERLLPGAL 200
+P A Q K S S + RAE L+PG +
Sbjct: 10 QPQAMRQEKKSISVSFRAENLIPGVV 35
>At4g32900.1 68417.m04681 expressed protein
Length = 143
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 277 RPGAQAQRKHSASEADRAERLLPGAL 200
+P A Q K S S + RAE L+PG +
Sbjct: 10 QPQAMRQEKKSISVSFRAENLIPGVV 35
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -2
Query: 282 HRGPAPRHSGNTRRPKPTELSACCRERSETPR 187
HR A HS + RR K E C RE S + R
Sbjct: 248 HRSSAHTHSSHRRRSKDRE--ECSREESRSDR 277
>At5g35750.1 68418.m04281 histidine kinase (AHK2) identical to
histidine kinase AHK2 [Arabidopsis thaliana]
gi|13537196|dbj|BAB40774
Length = 1176
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 96 LNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPG 212
+ SS S+ Y G G+ +K++ ++ G+ +S PG
Sbjct: 816 MQADSSTSRTYGGTGIGLSISKRLVELMQGEMGFVSEPG 854
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 210 RERSETPRHRNKPSRPVWSRRSPHH 136
R RS +P +R +PS RRSP +
Sbjct: 154 RRRSPSPVYRRRPSPDYTRRRSPEY 178
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 210 RERSETPRHRNKPSRPVWSRRSPHH 136
R RS +P +R +PS RRSP +
Sbjct: 180 RRRSPSPVYRRRPSPDYTRRRSPEY 204
>At2g07776.2 68415.m00891 hypothetical protein
Length = 109
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 300 QGHQDHHRGPAPRHSGNTRRPKP 232
QGHQ P PR+ N R P P
Sbjct: 21 QGHQMRDLLPTPRNRSNGRLPSP 43
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 25.8 bits (54), Expect = 7.2
Identities = 17/51 (33%), Positives = 20/51 (39%)
Frame = -2
Query: 288 DHHRGPAPRHSGNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPHH 136
D R A T R + + SA R ETPR WSR+ HH
Sbjct: 297 DRGRREASNELNRTPRKQVQKKSALLR--LETPRSYKNSRENEWSRQHNHH 345
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 25.8 bits (54), Expect = 7.2
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Frame = -2
Query: 333 RSPLRAVQSREQGHQDHHRGPAPRHSGNTRRPKP-----TELSACCRERSETPRHRNKPS 169
R P R+ G R P PR + RR P + R R +TP R +P+
Sbjct: 213 RRPRETSPQRKTGLSPRRRSPLPRRGLSPRRRSPDSPHRRRPGSPIRRRGDTP-PRRRPA 271
Query: 168 RPVWSR-RSP 142
P SR RSP
Sbjct: 272 SP--SRGRSP 279
>At5g54650.2 68418.m06805 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -1
Query: 337 PPVTPPGGAEP*AGTSGPPQRPGAQAQR 254
PP PP P +G PP PG + R
Sbjct: 385 PPRPPPPAPPPGSGGPKPPPPPGPKGPR 412
>At5g54650.1 68418.m06804 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -1
Query: 337 PPVTPPGGAEP*AGTSGPPQRPGAQAQR 254
PP PP P +G PP PG + R
Sbjct: 385 PPRPPPPAPPPGSGGPKPPPPPGPKGPR 412
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 25.4 bits (53), Expect = 9.5
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = -2
Query: 330 SPLRAVQSREQGHQDHHRGPAPRHSGNTRRPKPTELSACCRERSETPRHRNKPSRPVWSR 151
SP+ A + +E+ D+ R +P +RR P R +++PR R + + P
Sbjct: 170 SPVAAYR-KERTSPDYGRRRSPSPYKKSRRGSPEY--GRDRRGNDSPRRRERVASPTKYS 226
Query: 150 RSPHH 136
RSP++
Sbjct: 227 RSPNN 231
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 25.4 bits (53), Expect = 9.5
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = -2
Query: 330 SPLRAVQSREQGHQDHHRGPAPRHSGNTRRPKPTELSACCRERSETPRHRNKPSRPVWSR 151
SP+ A + +E+ D+ R +P +RR P R +++PR R + + P
Sbjct: 211 SPVAAYR-KERTSPDYGRRRSPSPYKKSRRGSPEY--GRDRRGNDSPRRRERVASPTKYS 267
Query: 150 RSPHH 136
RSP++
Sbjct: 268 RSPNN 272
>At2g07630.1 68415.m00881 hypothetical protein
Length = 458
Score = 25.4 bits (53), Expect = 9.5
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 90 QQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSA-LSASDAECF 254
Q L C + +K Y + DS++ + YS + + + P SKRS+ S S A+ F
Sbjct: 369 QYLVCVENENKRYQMH--DSIDQCSLMLTYSEEPSEATTPSSKRSSDTSISPADNF 422
>At1g69740.1 68414.m08025 porphobilinogen synthase, putative /
delta-aminolevulinic acid dehydratase, putative similar
to delta-aminolevulinic acid dehydratase (Alad)
GI:493019 [SP|P43210] from Glycine max, SP|P24493 from
Spinacia oleracea, SP|P30124 from Pisum sativum
Length = 430
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +3
Query: 192 ASLSAPGSKRSALSASDAECFRCAWAPGLCGGPDVPAHGSAPPG 323
AS S G + L SDAEC A + P VP +AP G
Sbjct: 53 ASESGNGHAKK-LGMSDAECEAAVAAGNVPEAPPVPPKPAAPVG 95
>At1g21630.1 68414.m02708 calcium-binding EF hand family protein
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain; ESTs gb|T44428 and gb|AA395440 come from this
gene
Length = 1218
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -1
Query: 322 PGGAEP*AGTSGPPQRP 272
PGG P AG G P RP
Sbjct: 540 PGGLRPPAGPKGKPPRP 556
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,934,899
Number of Sequences: 28952
Number of extensions: 161431
Number of successful extensions: 681
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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