Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0823
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    27   1.6  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    26   3.6  
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    25   8.4  
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc...    25   8.4  

>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 374  LSNKKNSIWCCI*NPSTCYSGAILIGPFQRKLFNTLELGSPYVYPLNP 517
            L+ K +S W CI +P   Y G       +  LF     GSP+ +  NP
Sbjct: 1567 LNTKFDSPWPCISSPIYRYRGPSAGSVEREPLFLIAASGSPHAFIWNP 1614


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 337 WLLEPIYDVNAPPTLRYKFSIVTTAASSSNRN 242
           +L  PI+ VNA P L + +S+V T A +  +N
Sbjct: 22  FLTTPIFYVNAAPHLGHLYSLVLTDAIARFQN 53


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 75  YWKTHRNSASVGSGNYMNIAAINK 146
           Y+ TH+  A    GNY+ I ++ K
Sbjct: 493 YFSTHQQFADARIGNYLGIQSLRK 516


>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 275 YTELISQGGWRIYVVD 322
           Y E IS+ GWR+ V D
Sbjct: 19  YAEYISKAGWRVNVCD 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,001
Number of Sequences: 5004
Number of extensions: 50232
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)