Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0823
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0095 - 20030237-20031711,20031731-20033057                       28   6.5  
04_04_0240 + 23851859-23851917,23852018-23852087,23852177-238533...    27   8.6  
01_01_0999 - 7902813-7903466                                           27   8.6  

>11_06_0095 - 20030237-20031711,20031731-20033057
          Length = 933

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 125 HIISTSYTSAISVSLPIITCFYTWILLQLVPYTRW 21
           H+ +  Y S I +   + TCF T I LQ     RW
Sbjct: 425 HVRNILYLSYIYLPTQLKTCFQTTIFLQAKKLVRW 459


>04_04_0240 +
           23851859-23851917,23852018-23852087,23852177-23853394,
           23853504-23854040
          Length = 627

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = -1

Query: 322 IYDVNAPPTLRYKFSIVTTAASSSNRNALLLHGRNRQGGGTYPC---GLRRGPTISKLAH 152
           +YDV+A  T+  +F++   AAS S + +    GR+R+          G RR  +++ ++H
Sbjct: 334 LYDVDAVVTILEEFALRQAAASGSPKGSPARAGRHRRSMSAESGELEGARRSTSMAAVSH 393


>01_01_0999 - 7902813-7903466
          Length = 217

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -1

Query: 370 GGRAHSQP-GVEWLLEPIYDVNAPPTLRYKFSIVTTAASSSNRNALL-LHGRNRQGGGTY 197
           GG A  QP  V+   +    + A    R+  +I+   A+SS R  L+   G+ R+GGG  
Sbjct: 52  GGGAPPQPRAVKAAADSALALTARGQSRWSRAILLAGAASSRRRVLVKAGGKIRRGGGGN 111

Query: 196 PC 191
            C
Sbjct: 112 SC 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,840,530
Number of Sequences: 37544
Number of extensions: 342099
Number of successful extensions: 682
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)