Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0823
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12)       29   2.2  
SB_47028| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  

>SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12)
          Length = 1206

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = +2

Query: 335  PLNTRLAVSSSTHLSNKKNSIWCCI*NPSTCYSGAILIGPFQRKLFNTLELGSPYVYPLN 514
            P +T LA SS+T L NK +  +  I      Y+G   +  F  +  N + L +PY YP  
Sbjct: 1148 PKSTPLA-SSATFLYNKIDIPYALI---DRWYTGPQTVNAFYMRTRNEINLTTPYPYPRC 1203

Query: 515  PLW 523
              W
Sbjct: 1204 QEW 1206


>SB_47028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = -3

Query: 509 EGRRKEN---QVQVY*KVSAEKDQLRWRHCSKWKDFKYSTIYYFFYCL 375
           +GRR E    +++    V  E+  LR+    + +DF+Y T+Y  FYCL
Sbjct: 141 KGRRPEKMKFKIKDQSSVVLERRDLRFNDLIR-EDFEYLTVYCRFYCL 187


>SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -1

Query: 271 TTAASSSNRNALLLHGRNRQGGGTYPCGLRRG 176
           T  +S S+ N+  L  +NR+G GTYP  LR G
Sbjct: 718 TQDSSFSSDNSFSLEDKNREGPGTYP--LRSG 747


>SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1362

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +2

Query: 365 STHLSNKKNSIWCCI*NPSTC--YSGAILIGPFQRKLFNTLELGSPYVYPLNP 517
           STH S ++  +W C  N S+C  +S + L      K ++     +  +YP +P
Sbjct: 223 STHESTEEKFVWKCDPNYSSCESFSDSELSPRLSSKYYSLKRSKASLIYPRSP 275


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,904,889
Number of Sequences: 59808
Number of extensions: 367826
Number of successful extensions: 796
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)