Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0823
         (598 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128672-1|BAC87563.1|  141|Homo sapiens protein ( Homo sapiens ...    30   5.4  
AJ389195-1|CAB51735.1|  131|Homo sapiens immunoglobulin heavy ch...    29   9.5  

>AK128672-1|BAC87563.1|  141|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46835 fis, clone UTERU2028377. ).
          Length = 141

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
 Frame = +2

Query: 281 ELISQGGWRIYVVDGLQ*PLNTRLAVSSSTHLSNKKNSI------WCCI*NPS 421
           EL+  G WR+        PL++RL   +  HL+N K SI      WC +  PS
Sbjct: 65  ELLEPGRWRLRWAGTA--PLHSRLGKRARLHLNNNKKSIEVAKYYWCIVYLPS 115


>AJ389195-1|CAB51735.1|  131|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 131

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 434 HCSKWKDFKYSTIYYFFYCLDGW 366
           +C++ K  +Y T YY++Y +D W
Sbjct: 94  YCARAKLLQYPTYYYYYYGMDVW 116


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,442,428
Number of Sequences: 237096
Number of extensions: 1983415
Number of successful extensions: 3047
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3046
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)